Responses of an Agricultural Soil Microbiome to Flooding with Seawater after Managed Coastal Realignment

Kamilla Schneekloth Sjøgaard, Thomas Bruun Valdemarsen, Alexander H. Treusch

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Abstract

Coastal areas have become more prone to flooding with seawater due to climate-change-induced sea-level rise and intensified storm surges. One way to cope with this issue is by "managed coastal realignment", where low-lying coastal areas are no longer protected and instead flooded with seawater. How flooding with seawater impacts soil microbiomes and the biogeochemical cycling of elements is poorly understood. To address this, we conducted a microcosm experiment using soil cores collected at the nature restoration project site Gyldensteen Strand (Denmark), which were flooded with seawater and monitored over six months. Throughout the experiment, biogeochemical analyses, microbial community fingerprinting and the quantification of marker genes documented clear shifts in microbiome composition and activity. The flooding with seawater initially resulted in accelerated heterotrophic activity that entailed high ammonium production and net removal of nitrogen from the system, also demonstrated by a concurrent increase in the abundances of marker genes for ammonium oxidation and denitrification. Due to the depletion of labile soil organic matter, microbial activity decreased after approximately four months. The event of flooding caused the largest shifts in microbiome composition with the availability of labile organic matter subsequently being the most important driver for the succession in microbiome composition in soils flooded with seawater.

Original languageEnglish
Article number12
JournalMicroorganisms
Volume6
Issue number1
Number of pages18
ISSN2076-2607
DOIs
Publication statusPublished - 2018

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Microbiota
Seawater
Ammonium Compounds
Denmark
Nitrogen

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title = "Responses of an Agricultural Soil Microbiome to Flooding with Seawater after Managed Coastal Realignment",
abstract = "Coastal areas have become more prone to flooding with seawater due to climate-change-induced sea-level rise and intensified storm surges. One way to cope with this issue is by {"}managed coastal realignment{"}, where low-lying coastal areas are no longer protected and instead flooded with seawater. How flooding with seawater impacts soil microbiomes and the biogeochemical cycling of elements is poorly understood. To address this, we conducted a microcosm experiment using soil cores collected at the nature restoration project site Gyldensteen Strand (Denmark), which were flooded with seawater and monitored over six months. Throughout the experiment, biogeochemical analyses, microbial community fingerprinting and the quantification of marker genes documented clear shifts in microbiome composition and activity. The flooding with seawater initially resulted in accelerated heterotrophic activity that entailed high ammonium production and net removal of nitrogen from the system, also demonstrated by a concurrent increase in the abundances of marker genes for ammonium oxidation and denitrification. Due to the depletion of labile soil organic matter, microbial activity decreased after approximately four months. The event of flooding caused the largest shifts in microbiome composition with the availability of labile organic matter subsequently being the most important driver for the succession in microbiome composition in soils flooded with seawater.",
author = "Sj{\o}gaard, {Kamilla Schneekloth} and Valdemarsen, {Thomas Bruun} and Treusch, {Alexander H.}",
year = "2018",
doi = "10.3390/microorganisms6010012",
language = "English",
volume = "6",
journal = "Microorganisms",
issn = "2076-2607",
publisher = "MDPI",
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}

Responses of an Agricultural Soil Microbiome to Flooding with Seawater after Managed Coastal Realignment. / Sjøgaard, Kamilla Schneekloth; Valdemarsen, Thomas Bruun; Treusch, Alexander H.

In: Microorganisms, Vol. 6, No. 1, 12, 2018.

Research output: Contribution to journalJournal articleResearchpeer-review

TY - JOUR

T1 - Responses of an Agricultural Soil Microbiome to Flooding with Seawater after Managed Coastal Realignment

AU - Sjøgaard, Kamilla Schneekloth

AU - Valdemarsen, Thomas Bruun

AU - Treusch, Alexander H.

PY - 2018

Y1 - 2018

N2 - Coastal areas have become more prone to flooding with seawater due to climate-change-induced sea-level rise and intensified storm surges. One way to cope with this issue is by "managed coastal realignment", where low-lying coastal areas are no longer protected and instead flooded with seawater. How flooding with seawater impacts soil microbiomes and the biogeochemical cycling of elements is poorly understood. To address this, we conducted a microcosm experiment using soil cores collected at the nature restoration project site Gyldensteen Strand (Denmark), which were flooded with seawater and monitored over six months. Throughout the experiment, biogeochemical analyses, microbial community fingerprinting and the quantification of marker genes documented clear shifts in microbiome composition and activity. The flooding with seawater initially resulted in accelerated heterotrophic activity that entailed high ammonium production and net removal of nitrogen from the system, also demonstrated by a concurrent increase in the abundances of marker genes for ammonium oxidation and denitrification. Due to the depletion of labile soil organic matter, microbial activity decreased after approximately four months. The event of flooding caused the largest shifts in microbiome composition with the availability of labile organic matter subsequently being the most important driver for the succession in microbiome composition in soils flooded with seawater.

AB - Coastal areas have become more prone to flooding with seawater due to climate-change-induced sea-level rise and intensified storm surges. One way to cope with this issue is by "managed coastal realignment", where low-lying coastal areas are no longer protected and instead flooded with seawater. How flooding with seawater impacts soil microbiomes and the biogeochemical cycling of elements is poorly understood. To address this, we conducted a microcosm experiment using soil cores collected at the nature restoration project site Gyldensteen Strand (Denmark), which were flooded with seawater and monitored over six months. Throughout the experiment, biogeochemical analyses, microbial community fingerprinting and the quantification of marker genes documented clear shifts in microbiome composition and activity. The flooding with seawater initially resulted in accelerated heterotrophic activity that entailed high ammonium production and net removal of nitrogen from the system, also demonstrated by a concurrent increase in the abundances of marker genes for ammonium oxidation and denitrification. Due to the depletion of labile soil organic matter, microbial activity decreased after approximately four months. The event of flooding caused the largest shifts in microbiome composition with the availability of labile organic matter subsequently being the most important driver for the succession in microbiome composition in soils flooded with seawater.

U2 - 10.3390/microorganisms6010012

DO - 10.3390/microorganisms6010012

M3 - Journal article

VL - 6

JO - Microorganisms

JF - Microorganisms

SN - 2076-2607

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