EnCurv: Simple Technique of Maintaining Global Membrane Curvature in Molecular Dynamics Simulations

Semen Yesylevskyy*, Himanshu Khandelia

*Corresponding author for this work

Research output: Contribution to journalJournal articleResearchpeer-review

Abstract

The EnCurv method for maintaining membrane curvature in molecular dynamics simulations is introduced. The method allows maintaining any desired curvature in a sector of lipid membrane bent in a single plane without adding any unphysical interactions into the system and without restrictions on lateral and transversal lipid diffusion and distribution. The current implementation is limited to the membranes curved in a single plane but generalization to arbitrary curvature and membrane topology is possible. The method is simple, easy to implement, and scales linearly with the system size. EnCurv is agnostic to the force field, simulation parameters, and membrane composition. The proof of principle implementation (https://github.com/yesint/EnCurv) is compatible with the majority of modern simulation packages and shows consistent results on the model systems.

Original languageEnglish
JournalJournal of Chemical theory and Computation
Volume17
Issue number2
Pages (from-to)1181–1193
ISSN1549-9618
DOIs
Publication statusPublished - 2021

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