Although seagrasses cover only a minor fraction of the ocean seafloor, their carbon sink capacity accounts for nearly one-fifth of the total oceanic carbon burial and thus play a critical structural and functional role in many coastal ecosystems. We sampled 10 eelgrass (Zostera marina) meadows in Finland and 10 in Denmark to explore seagrass carbon stocks (C org stock) and carbon accumulation rates (C org accumulation) in the Baltic Sea area. The study sites represent a gradient from sheltered to exposed locations in both regions to reflect expected minimum and maximum stocks and accumulation. The C org stock integrated over the top 25 cm of the sediment averaged 627 g Cm -2 in Finland, while in Denmark the average C org stock was over 6 times higher (4324 gCm -2). A conservative estimate of the total organic carbon pool in the regions ranged between 6.98 and 44.9t Cha -1. Our results suggest that the Finnish eelgrass meadows are minor carbon sinks compared to the Danish meadows, and that majority of the C org produced in the Finnish meadows is exported. Our analysis further showed that > 40% of the variation in the C org stocks was explained by sediment characteristics, i.e. dry density, porosity and silt content. In addition, our analysis show that the root : shoot ratio of Z. marina explained > 12% and the contribution of Z. marina detritus to the sediment surface C org pool explained > 10% of the variation in the C org stocks. The mean monetary value for the present carbon storage and carbon sink capacity of eelgrass meadows in Finland and Denmark, were 281 and 1809 EUR ha -1, respectively. For a more comprehensive picture of seagrass carbon storage capacity, we conclude that future blue carbon studies should, in a more integrative way, investigate the interactions between sediment biogeochemistry, seascape structure, plant species architecture and the hydrodynamic regime.