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2019
89 Downloads (Pure)

A self-assembled, modular nucleic acid-based nanoscaffold for multivalent theranostic medicine

Andersen, V. L., Vinther, M., Kumar, R., Ries, A., Wengel, J., Nielsen, J. S. & Kjems, J., 2019, In : Theranostics. 9, 9, p. 2662-2677

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Nucleic Acids
Medicine
Precision Medicine
Confocal Microscopy
Hepatocytes
154 Downloads (Pure)

Fibrin-hyaluronic acid hydrogel-based delivery of antisense oligonucleotides for ADAMTS5 inhibition in co-delivered and resident joint cells in osteoarthritis

Garcia, J. P., Stein, J., Cai, Y., Riemers, F., Wexselblatt, E., Wengel, J., Tryfonidou, M., Yayon, A., Howard, K. A. & Creemers, L. B., 28. Jan 2019, In : Journal of Controlled Release. 294, p. 247-258

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Hydrogel
Hyaluronic Acid
Chondrocytes
Joints
Disintegrins

Improved RE31 Analogues Containing Modified Nucleic Acid Monomers: Thermodynamic, Structural, and Biological Effects

Kotkowiak, W., Wengel, J., Scotton, C. J. & Pasternak, A., 14. Mar 2019, In : Journal of Medicinal Chemistry. 62, 5, p. 2499-2507

Research output: Contribution to journalJournal articleResearchpeer-review

Nucleic Acids
Nucleotide Aptamers
RNA
Freezing
Serum
90 Downloads (Pure)

microRNA-155 inhibition restores Fibroblast Growth Factor 7 expression in diabetic skin and decreases wound inflammation

Moura, J., Sørensen, A., Leal, E. C., Svendsen, R., Carvalho, L., Willemoes, R. J., Jørgensen, P. T., Jenssen, H., Wengel, J., Dalgaard, L. T. & Carvalho, E., 9. Apr 2019, In : Scientific Reports. 9, 11 p., 5836.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Fibroblast Growth Factor 7
MicroRNAs
Skin
Wounds and Injuries
Diabetic Foot
41 Downloads (Pure)

Molecular determinants for agonist recognition and discrimination in P2X2 receptors

Gasparri, F., Wengel, J., Grutter, T. & Pless, S. A., 1. Jul 2019, In : Journal of General Physiology. 151, 7, p. 898-911 14 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Ligands
Site-Directed Mutagenesis
Amides
Cations
Esters

Novel assemblies based on oligonucleotides containing intercalating nucleic acid monomers

Abdelrahman, A., Gouda, A. S., Jørgensen, P. T. & Wengel, J., 1. Nov 2019, In : Nucleosides, Nucleotides and Nucleic Acids.

Research output: Contribution to journalJournal articleResearchpeer-review

Oligonucleotides
Nucleic Acids
Monomers
Molecular modeling
Fluorescence spectroscopy
83 Downloads (Pure)

Oligonucleotide binding to non-B-DNA in MYC

Umek, T., Sollander, K., Bergquist, H., Wengel, J., Lundin, K. E., Edvard Smith, C. I. & Zain, R., 12. Mar 2019, In : Molecules. 24, 5, 11 p., 1000.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
oligonucleotides
Oligonucleotides
genes
strands
Genes
35 Downloads (Pure)

Synthetic, structural, and anticancer activity evaluation studies on novel pyrazolylnucleosides

Yadav, Y., Sharma, D., Kaushik, K., Kumar, V., Jha, A., Prasad, A. K., Len, C., Malhotra, S. V., Wengel, J. & Parmar, V. S., 30. Oct 2019, In : Molecules. 24, 21, 16 p., 3922.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
cultured cells
Cells
Cell Line
evaluation
cancer
99 Downloads (Pure)

The ability of locked nucleic acid oligonucleotides to pre-structure the double helix: A molecular simulation and binding study

Xu, Y., Gissberg, O., Pabon-Martinez, Y. V., Wengel, J., Lundin, K. E., Smith, C. I. E., Zain, R., Nilsson, L. & Villa, A., 2019, In : PLOS ONE. 14, 2, 14 p., e0211651.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
oligonucleotides
Oligonucleotides
nucleic acids
DNA
molecular dynamics
2018
229 Downloads (Pure)

Hydrogel-Assisted Antisense LNA Gapmer Delivery for In Situ Gene Silencing in Spinal Cord Injury

Moreno, P. M. D., Ferreira, A. R., Salvador, D., Rodrigues, M. T., Torrado, M., Carvalho, E. D., Tedebark, U., Sousa, M. M., Amaral, I. F., Wengel, J. & Pêgo, A. P., 2018, In : Molecular Therapy - Nucleic Acids. 11, p. 393-406

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Hydrogel
Spinal Ganglia
Nucleic Acids
Cell Survival
Down-Regulation
98 Downloads (Pure)

MicroRNA therapeutics: design of single-stranded miR-216b mimics to target KRAS in pancreatic cancer cells

Ferino, A., Miglietta, G., Picco, R., Vogel, S., Wengel, J. & Xodo, L. E., 2018, In : RNA Biology. 15, 10, p. 1273-1285

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
MicroRNAs
Pancreatic Neoplasms
Cell-Penetrating Peptides
Nucleic Acids
Down-Regulation
75 Downloads (Pure)

Modification of oligodeoxynucleotides by on-column Suzuki cross-coupling reactions

Ejlersen, M., Lou, C., Sanghvi, Y. S., Tor, Y. & Wengel, J., 12. Jul 2018, In : Chemical Communications. 54, 57, p. 8003-8006

Research output: Contribution to journalLetterResearchpeer-review

Open Access
File
Oligonucleotides
Oligodeoxyribonucleotides
Boronic Acids
Monomers
Acids
94 Downloads (Pure)

Novel conformationally constrained 2'-C-methylribonucleosides: synthesis and incorporation into oligonucleotides

Vejlegaard, K., Wegeberg, C., McKee, V. & Wengel, J., 2018, In : Organic & Biomolecular Chemistry. 16, 8, p. 1312-1321

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Oligonucleotides
Bearings (structural)
Derivatives
Ribonucleosides
Complementary RNA
74 Downloads (Pure)

Palmitoylated phosphodiester gapmer designs with albumin binding capacity and maintained in vitro gene silencing activity

Cai, Y., Makarova, A-M., Wengel, J. & Howard, K. A., 2018, In : Journal of Gene Medicine. 20, 7-8, p. 1-6

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Caco-2 Cells
Albumins
erbB-1 Genes
Flow Cytometry
Fatty Acids
103 Downloads (Pure)

Synergy of Two Highly Specific Biomolecular Recognition Events: Aligning an AT-Hook Peptide in DNA Minor Grooves via Covalent Conjugation to 2'-Amino-LNA

Ejlersen, M., Christensen, N. J., Sørensen, K. K., Jensen, K. J., Wengel, J. & Lou, C., 2018, In : Bioconjugate Chemistry. 29, 4, p. 1025–1029

Research output: Contribution to journalLetterResearchpeer-review

Open Access
File
AT-Hook Motifs
Hooks
Peptides
DNA
Oligonucleotides
108 Downloads (Pure)

Targeting miR-9 in gastric cancer cells using locked nucleic acid oligonucleotides

Lima, J. F., Carvalho, J., Pinto-Ribeiro, I., Almeida, C., Wengel, J., Cerqueira, L., Figueiredo, C., Oliveira, C. & Azevedo, N. F., 7. Jun 2018, In : BMC Molecular Biology. 19, 13 p., 6.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
MicroRNAs
Cell Movement
Culture Media
Up-Regulation
94 Downloads (Pure)

Thermodynamic, Anticoagulant, and Antiproliferative Properties of Thrombin Binding Aptamer Containing Novel UNA Derivative

Kotkowiak, W., Lisowiec-Wachnicka, J., Grynda, J., Kierzek, R., Wengel, J. & Pasternak, A., 2018, In : Molecular Therapy - Nucleic Acids. 10, p. 304-316

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Nucleic Acids
Fibrinolysis
HeLa Cells
Cell Movement
Cell Proliferation
88 Downloads (Pure)

Unlocked nucleic acid modified primer-based enzymatic polymerization assay: Towards allele-specific genotype detection of human platelet antigens

Le, B. T., Hughes, Q., Rakesh, S., Baker, R., Jørgensen, P. T., Wengel, J. & Veedu, R. N., 2018, In : RSC Advances. 8, 57, p. 32770-32774

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Human Platelet Antigens
Nucleic acids
Antigens
Nucleotides
Platelets
2017

3'-Pyrene-modified unlocked nucleic acids: synthesis, fluorescence properties and a surprising stabilization effect on duplexes and triplexes

Ejlersen, M., Langkjær, N. & Wengel, J., 2017, In : Organic & Biomolecular Chemistry. 15, 9, p. 2073-2085

Research output: Contribution to journalJournal articleResearchpeer-review

Nucleic Acids
Oligonucleotides
Stabilization
Fluorescence
DNA
136 Downloads (Pure)

A hyaluronic acid-based hydrogel enabling CD44-mediated chondrocyte binding and gapmer oligonucleotide release for modulation of gene expression in osteoarthritis

Cai, Y., López-Ruiz, E., Wengel, J., Creemers, L. B. & Howard, K. A., 2017, In : Journal of controlled release : official journal of the Controlled Release Society. 253, p. 153-159

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Hydrogel
Hyaluronic Acid
Chondrocytes
Patient Participation
Schiff Bases
144 Downloads (Pure)

An Albumin-Oligonucleotide Assembly for Potential Combinatorial Drug Delivery and Half-Life Extension Applications

Kuhlmann, M., Hamming, J. B. R., Voldum, A., Tsakiridou, G., Larsen, M. T., Schmøkel, J. S., Sohn, E., Bienk, K., Schaffert, D., Sørensen, E. S., Wengel, J., Dupont, D. M. & Howard, K. A., 2017, In : Molecular Therapy - Nucleic Acids. 9, p. 284-293

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Life Expectancy
Half-Life
Albumins
Factor IXa
Pharmaceutical Preparations
299 Downloads (Pure)

CTG repeat-targeting oligonucleotides for down-regulating Huntingtin expression

Zaghloul, E. M., Gissberg, O., Moreno, P. M. D., Siggens, L., Hällbrink, M., Jørgensen, A. S., Ekwall, K., Zain, R., Wengel, J., Lundin, K. E. & Smith, C. I. E., 2017, In : Nucleic Acids Research. 45, 9, p. 5153-5169

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Huntington Disease
Trinucleotide Repeat Expansion
Gene Knockdown Techniques
Messenger RNA
Proteins
126 Downloads (Pure)

Development of an Efficient G-Quadruplex-Stabilised Thrombin-Binding Aptamer Containing a Three-Carbon Spacer Molecule

Aaldering, L. J., Poongavanam, V., Langkjær, N., Murugan, N. A., Jørgensen, P. T., Wengel, J. & Veedu, R. N., 2017, In : ChemBioChem. 18, 8, p. 755–763

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Carbon
Molecules
Thrombin
Nucleic Acids
Circular dichroism spectroscopy
105 Downloads (Pure)

Fatty Acid-Modified Gapmer Antisense Oligonucleotide and Serum Albumin Constructs for Pharmacokinetic Modulation

Hvam, M. L., Cai, Y., Dagnæs-Hansen, F., Nielsen, J. S., Wengel, J., Kjems, J. & Howard, K. A., 2017, In : Molecular Therapy. 25, 7, p. 1710-1717

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Fatty Acids
Pharmacokinetics
Albumins
Palmitic Acid
Myristic Acid
115 Downloads (Pure)

Folding Topology of a Short Coiled-Coil Peptide Structure Templated by an Oligonucleotide Triplex

Lou, C., Christensen, N. J., Martos-Maldonado, M. C., Midtgaard, S. R., Ejlersen, M., Thulstrup, P. W., Sørensen, K. K., Jensen, K. J. & Wengel, J., 2017, In : Chemistry: A European Journal. 23, 39, p. 9297–9305

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Oligonucleotides
Peptides
Topology
Circular dichroism spectroscopy
Denaturation
180 Downloads (Pure)

LNA effects on DNA binding and conformation: from single strand to duplex and triplex structures

Pabon-Martinez, Y. V., Xu, Y., Villa, A., Lundin, K. E., Geny, S., Nguyen, C-H., Pedersen, E. B., Jørgensen, P. T., Wengel, J., Nilsson, L., Smith, C. I. E. & Zain, R., 2017, In : Scientific Reports. 7, 1, 16 p., 11043.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
DNA
Electrophoretic Mobility Shift Assay
Molecular Dynamics Simulation
Nucleic Acids
triplex DNA
214 Downloads (Pure)

Oligodeoxynucleotides containing 2'-amino-LNA nucleotides as constrained morpholino phosphoramidate and phosphorodiamidate monomers

Kristensen, K. V., Paul, S., Kosbar, T., Wengel, J. & Caruthers, M. H., 2017, In : Bioorganic & Medicinal Chemistry Letters. 27, 14, p. 3173–3176

Research output: Contribution to journalLetterResearchpeer-review

Open Access
File
Morpholinos
Oligodeoxyribonucleotides
Nucleotides
Monomers
Complementary RNA

Oligonucleotides Containing Aminated 2'-Amino-LNA Nucleotides: Synthesis and Strong Binding to Complementary DNA and RNA

Lou, C., Samuelsen, S. V., Christensen, N. J., Vester, B. & Wengel, J., 2017, In : Bioconjugate Chemistry. 28, 4, p. 1214-1220

Research output: Contribution to journalJournal articleResearchpeer-review

Complementary RNA
Oligonucleotides
Nucleotides
RNA
DNA
234 Downloads (Pure)

Role of Pseudoisocytidine Tautomerization in Triplex-Forming Oligonucleotides: In Silico and in Vitro Studies

Hartono, Y. D., Pabon-Martinez, Y. V., Uyar, A., Wengel, J., Lundin, K. E., Zain, R., Smith, C. I. E., Nilsson, L. & Villa, A., 2017, In : ACS Omega. 2, 5, p. 2165-2177 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Cytidine
Oligonucleotides
Thymine
DNA sequences
Nucleic acids

Site-selective conjugation of an anticoagulant aptamer to recombinant albumins and maintenance of neonatal Fc receptor binding

Schmøkel, J., Voldum, A., Tsakiridou, G., Kuhlmann, M., Cameron, J., Sørensen, E. S., Wengel, J. & Howard, K. A., 2017, In : Nanotechnology. 28, 20, 9 p., 204004.

Research output: Contribution to journalJournal articleResearchpeer-review

Pharmacokinetics
Nucleic acids
High performance liquid chromatography
Cyclohexane
Electrophoresis
145 Downloads (Pure)

Synthesis and Excellent Duplex Stability of Oligonucleotides Containing 2'-Amino-LNA Functionalized with Galactose Units

Kumar, R., Ries, A. & Wengel, J., 2017, In : Molecules. 22, 5, 13 p., 852.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
galactose
oligonucleotides
Galactose
Oligonucleotides
complementary DNA
2016

An albumin-mediated cholesterol design-based strategy for tuning siRNA pharmacokinetics and gene silencing

Bienk, K., Hvam, M. L., Pakula, M. M., Dagnæs-Hansen, F., Wengel, J., Malle, B. M., Kragh-Hansen, U., Cameron, J., Bukrinski, J. T. & Howard, K. A., 2016, In : Journal of Controlled Release. 232, p. 143-151

Research output: Contribution to journalJournal articleResearchpeer-review

RNA Interference
Small Interfering RNA
Albumins
Pharmacokinetics
Half-Life

Application of locked nucleic acid-based probes in fluorescence in situ hybridization

Fontenete, S., Carvalho, D. R., Guimarães, N., Madureira, P., Figueiredo, C., Wengel, J. & Azevedo, N. F., 2016, In : Applied Microbiology and Biotechnology. 100, 13, p. 5897-5906

Research output: Contribution to journalJournal articleResearchpeer-review

RNA
Microbiology
Helicobacter pylori
Nucleic Acids
Freezing

Delivery, Effect on Cell Viability, and Plasticity of Modified Aptamer Constructs

Gissberg, O., Zaghloul, E. M., Lundin, K. E., Nguyen, C-H., Landras-Guetta, C., Wengel, J., Zain, R. & Smith, C. I. E., 2016, In : Nucleic Acid Therapeutics. 26, 3, p. 183-189

Research output: Contribution to journalLetterResearchpeer-review

Oligonucleotides
Plasticity
Cell Survival
Cells
ellipticine

Evaluation of nucleolin and somatostatin receptor targeting for therapeutic delivery to lung cancer stem cells

Hansen, P. L., Holmboe, S., Olsen, B. B., Thisgaard, H., Christiansen, H., Schmidt, S., Block, I., Müller, C., Langkjær, N., Jørgensen, P. T., Vogel, S., Wengel, J., Høilund-Carlsen, P. F. & Mollenhauer, J., 27. Jun 2016.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

255 Downloads (Pure)

Fluorescence In Vivo Hybridization (FIVH) for Detection of Helicobacter pylori Infection in a C57BL/6 Mouse Model

Fontenete, S., Leite, M., Cappoen, D., Santos, R., Ginneken, C. V., Figueiredo, C., Wengel, J., Cos, P. & Azevedo, N. F., 2016, In : P L o S One. 11, 2, 18 p., e0148353.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Helicobacter pylori
Helicobacter Infections
probes (equipment)
hybridization
Fluorescence
290 Downloads (Pure)

Next-generation bis-locked nucleic acids with stacking linker and 2'-glycylamino-LNA show enhanced DNA invasion into supercoiled duplexes

Geny, S., Moreno, P. M. D., Krzywkowski, T., Gissberg, O., Andersen, N. K., Isse, A. J., El-Madani, A. M., Lou, C., Pabon, Y. V., Anderson, B. A., Zaghloul, E. M., Zain, R., Hrdlicka, P. J., Jørgensen, P. T., Nilsson, M., Lundin, K. E., Pedersen, E. B., Wengel, J. & Smith, C. I. E., 18. Mar 2016, In : Nucleic Acids Research. 44, 5, p. 2007-2019

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
DNA
Superhelical DNA
149 Downloads (Pure)

Peptide-oligonucleotide conjugates as nanoscale building blocks for assembly of an artificial three-helix protein mimic

Lou, C., Martos-Maldonado, M. C., Madsen, C. S., Thomsen, R. P., Midtgaard, S. R., Christensen, N. J., Kjems, J., Thulstrup, P. W., Wengel, J. & Jensen, K. J., 2016, In : Nature Communications. 7, p. 1-9 12294.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
oligonucleotides
Oligonucleotides
helices
peptides
assembly

Prediction of melting temperatures in fluorescence in situ hybridization (FISH) procedures using thermodynamic models

Fontenete, S., Guimarães, N., Wengel, J. & Azevedo, N. F., 2016, In : Critical Reviews in Biotechnology. 36, 3, p. 566-577

Research output: Contribution to journalReviewResearchpeer-review

Freezing
Nucleic Acids
DNA

Synthesis and Biophysical Investigations of Oligonucleotides Containing Galactose-Modified DNA, LNA and 2'-Amino-LNA Monomers

Ries, A., Kumar, R., Lou, C., Kosbar, T., Vengut-Climent, E., Jørgensen, P. T., Morales, J. C. & Wengel, J., 13. Oct 2016, In : The Journal of Organic Chemistry. 81, 22, p. 10845-10856

Research output: Contribution to journalJournal articleResearchpeer-review

Galactose
Oligonucleotides
Monomers
Derivatives
DNA