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• 2025

  Acceptance for the 2024 V.M. Goldschmidt Award to Donald E. Canfield

  Canfield, D. E., 1. Jan 2025, In: Geochimica et Cosmochimica Acta. 388, p. 309-314

  Research output: Contribution to journal › Comment/debate › Research

• Applications of Artificial Intelligence for Metastatic Gastrointestinal Cancer: A Systematic Literature Review

  Naemi, A., Tashk, A., Azar, A. S., Samimi, T., Tavassoli, G., Mohasefi, A. B., Khanshan, E. N., Najafabad, M. H., Tarighi, V., Wiil, U. K., Mohasefi, J. B., Pirnejad, H. & Niazkhani, Z., 6. Feb 2025, In: Cancers. 17, 3, 23 p., 558.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  2 Downloads (Pure)

• Conservation strategies aided by assessment of global genetic diversity

  Nogués-Bravo, D. & Rahbek, C., Feb 2025, In: Nature. 638, 8051, p. 615-616

  Research output: Contribution to journal › Journal article › Communication

• Coupling trace metal authigenic enrichments to likely particulate shuttles: On the oxygenated continental margin, a seasonally euxinic ocean inlet, and a permanently euxinic alpine lake

  Udy, N., 12. May 2025, Syddansk Universitet. Det Naturvidenskabelige Fakultet. 201 p.

  Research output: Thesis › Ph.D. thesis

• Description of Pseudomonas imrae sp. nov., carrying a novel class C β-lactamase gene variant, isolated from gut samples of Atlantic mackerel (Scomber scombrus)

  Salvà-Serra, F., Nimje, P., Piñeiro-Iglesias, B., Alarcón, L. A., Cardew, S., Inganäs, E., Jensie-Markopoulos, S., Ohlén, M., Sailer, H. S., Unosson, C., Fernández-Juárez, V., Pacherres, C. O., Kühl, M., Moore, E. R. B. & Marathe, N. P., 2025, In: Frontiers in Microbiology. 16, 13 p., 1530878.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

• Distinct effects of mucin on phage-host interactions in model systems of beneficial and pathogenic bacteria

  Jakin Lazar, J., Šimunović, K., Dogša, I., Mandić Mulec, I., Middelboe, M. & Dragoš, A., Jun 2025, In: Archives of Virology. 170, 6, 13 p., 133.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

• Early Career Recommendations for the Equitable Growth of a Marine Carbon Dioxide Removal Sector

  Kitch, G. D., Duke, P. J., Grabb, K. C., Simancas‐Giraldo, S., Adekunbi, F. O., Addey, C. I., Arbilla, L. A., Carvalho, A. C. O., Chu, S. N., Green, R. A., Hamnca, S., Ghosh, A., Kirkland, A., Lowder, K. B., Meléndez, M., Fontela, M., Robache, K., Ringham, M. C., Rønning, J. & Schockman, K. M. & 3 others, Stoll, M. M., Oliveira, R. R. D. & Wright‐Fairbanks, E. K., Dec 2025, In: Perspectives of Earth and Space Scientists. 6, 1, e2024CN000246.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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• Ecology of ammonia-oxidizing archaea under oxygen depletion

  García Otero, P., 26. May 2025, Syddansk Universitet. Det Naturvidenskabelige Fakultet. 186 p.

  Research output: Thesis › Ph.D. thesis

• Environmental drivers of microbial assembly and stability in lakes across biogeographical regions

  Stanić, I., Kajan, K., Selak, L. & Orlić, S., Mar 2025, In: Ecological Indicators. 172, 14 p., 113324.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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• Explainable AI for Smoking Behaviour Detection: A Danish Medical Records Study

  Sorayaie Azar, A., Høstgaard Bang Henriksen, M., Hilberg, O., Naemi, A., Mohasefi, J. B., Wiil, U. K. & Ebrahimi, A., 22. Jun 2025, Artificial Intelligence in Medicine: 23rd International Conference, AIME 2025. Springer, Vol. 15735. p. 384-388 5 p. (Lecture Notes in Computer Science).

  Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

• Exploring Biological Nitrogen Fixation Across the Benthic-Pelagic Boundary Layer

  Schlangen, I., 17. Jan 2025, Syddansk Universitet. Det Naturvidenskabelige Fakultet. 159 p.

  Research output: Thesis › Ph.D. thesis

  Open Access

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  95 Downloads (Pure)

• Investigation of cell surface biology and biophysics of a methanogenic Archaea capable of extracellular electron uptake

  Jabaley, A., 15. Jun 2025, Syddansk Universitet. Det Naturvidenskabelige Fakultet. 141 p.

  Research output: Thesis › Ph.D. thesis

• Isotopic Exchange between Aqueous Fe(II) and Solid Fe(III) in Lake Sediment─A Kinetic Assemblage Approach

  O’Connell, D. W., Mccammon, C., Byrne, J. M., Jensen, M. M., Thamdrup, B., Bruun Hansen, H. C., Postma, D. & Jakobsen, R., 25. Mar 2025, In: Environmental Science and Technology. 59, 11, p. 5534-5544

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  9 Downloads (Pure)

• Prophage-encoded chitinase gene supports growth of its bacterial host isolated from deep-sea sediments

  Middelboe, M., Traving, S. J., Castillo, D., Kalatzis, P. G. & Glud, R. N., 2. Jan 2025, In: The ISME Journal. 19, 1

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  6 Downloads (Pure)

• Proteomic analyses reveal the key role of gene co-option in the evolution of the scaly-foot snail scleritome

  Wong, W. C., Kwan, Y. H., He, X., Chen, C., Xiang, S., Xiao, Y., Long, L., Gao, K., Wang, N., Wu, L., Qian, P. Y. & Sun, J., Dec 2025, In: Communications Biology. 8, 1, 13 p., 337.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  11 Downloads (Pure)

• Rapid detection and quantification of Nile Red-stained microplastic particles in sediment samples

  Tsuchiya, M., Kitahashi, T., Taira, Y., Saito, H., Oguri, K., Nakajima, R., Lindsay, D. J. & Fujikura, K., 2025, In: PeerJ. 13, 3, e19196.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  1 Downloads (Pure)

• Spatial distributions of iron and manganese in surface waters of the Arctic's Laptev and East Siberian seas

  Kanna, N., Tateyama, K., Waseda, T., Timofeeva, A., Papadimitraki, M., Whitmore, L., Obata, H., Nomura, D., Ogawa, H., Yamashita, Y. & Polyakov, I., 26. Feb 2025, In: Biogeosciences. 22, 4, p. 1057-1076

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

• Strong Effects of Increased Hydrostatic Pressure on Polysaccharide-Hydrolyzing Enzyme Activities in Coastal Seawater and Sediments

  Lloyd, C. C., Balmonte, J. P., Glud, R. N. & Arnosti, C., Feb 2025, In: Journal of Geophysical Research: Biogeosciences. 130, 2, 11 p., e2024JG008417.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  3 Downloads (Pure)

• Sunlight drives the abiotic formation of nitrous oxide in fresh and marine waters

  Leon-Palmero, E., Morales-Baquero, R., Thamdrup, B., Löscher, C. & Reche, I., 14. Mar 2025, In: Science (New York, N.Y.). 387, 6739, p. 1198-1203

  Research output: Contribution to journal › Journal article › Research › peer-review

• Thallium cycling and boundary exchange in a continental margin basin

  Olesen, K. P., Nielsen, S. G., Ostrander, C. M., Udy, N. & Canfield, D. E., 15. Jun 2025, In: Geochimica et Cosmochimica Acta. 399, p. 64-81

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

• The impact of environmental oxygen concentrations on the physiology of oxygen-producing phototrophic organisms

  Hansen, H. F., 21. Jan 2025, Syddansk Universitet. Det Naturvidenskabelige Fakultet. 101 p.

  Research output: Thesis › Ph.D. thesis

• The Known Unknowns of Petrogenic Organic Carbon in Soils

  Evans, D. L., Doetterl, S., Gallarotti, N., Georgiadis, E., Nabhan, S., Wartenweiler, S. H., Rhyner, T. M. Y., Mittelbach, B. V. A., Eglinton, T. I., Hemingway, J. & Blattmann, T. M., Apr 2025, In: AGU Advances. 6, 2, 7 p., e2024AV001625.

  Research output: Contribution to journal › Comment/debate › Research › peer-review

  Open Access

  File

• The unicellular NUM v.0.91: A trait-based plankton model evaluated in two contrasting biogeographic provinces

  Hansen, T. F., Canfield, D. E., Andersen, K. H. & Bjerrum, C. J., Mar 2025, In: Geoscientific Model Development. 18, 6, p. 1895-1916

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  1 Downloads (Pure)

• Versatile nitrate-respiring heterotrophs are previously concealed contributors to sulfur cycle

  Shao, B., Xie, Y. G., Zhang, L., Ruan, Y., Liang, B., Zhang, R., Xu, X., Wang, W., Lin, Z., Pei, X., Wang, X., Zhao, L., Zhou, X., Wu, X., Xing, D., Wang, A., Lee, D. J., Ren, N., Canfield, D. E. & Hedlund, B. P. & 2 others, Hua, Z. S. & Chen, C., 31. Jan 2025, In: Nature Communications. 16, 1, p. 1202 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  11 Downloads (Pure)
• 2024

  3.7 billion year old detrital sediments in Greenland are consistent with active plate tectonics in the Eoarchean

  Boyd, A. J., Rosing, M. T., Harding, M. A. R., Canfield, D. E. & Hassenkam, T., Dec 2024, In: Communications Earth & Environment. 5, 1, 7 p., 201.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  15 Downloads (Pure)

• Adaptation of a methanogen to Fe⁰ corrosion via direct contact

  Kawaichi, S., Kotoky, R., Fiutowski, J. & Rotaru, A.-E., Dec 2024, In: NPJ Biofilms and Microbiomes. 10, 1, 7 p., 100.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  3 Downloads (Pure)

• Adaptation of a methanogen to the constructed environment

  Kawaichi, S., Kotoky, R., Fiutowski, J. & Rotaru, A.-E., 6. Mar 2024, 15 p. bioRxiv.

  Research output: Other contribution › Research

• Advances in understanding of air-sea exchange and cycling of greenhouse gases in the upper ocean

  Bange, H. W., Mongwe, P., Shutler, J. D., Arévalo-Martínez, D. L., Bianchi, D., Lauvset, S. K., Liu, C., Löscher, C. R., Martins, H., Rosentreter, J. A., Schmale, O., Steinhoff, T., Upstill-Goddard, R. C., Wanninkhof, R., Wilson, S. T. & Xie, H., 12. Jan 2024, In: Elementa. 12, 1, 26 p., 00044.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  30 Downloads (Pure)

• Aerotolerant methanogens use seaweed and seagrass metabolites to drive marine methane emissions

  Hall, N., Wong, W. W., Lappan, R., Ricci, F., Glud, R. N., Kawaichi, S., Rotaru, A.-E., Chris, G. & Cook, P. L. M., 18. Oct 2024, bioRxiv.

  Research output: Other contribution › Research

• Archaea oxidizing alkanes through alkyl-coenzyme M reductases

  Musat, F., Kjeldsen, K. U., Rotaru, A.-E., Chen, S.-C. & Musat, N., Jun 2024, In: Current Opinion in Microbiology. 79, 9 p., 102486.

  Research output: Contribution to journal › Literature review › Research › peer-review

  Open Access

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  48 Downloads (Pure)

• A review on passive and active anti-icing and de-icing technologies

  Rekuviene, R., Saeidiharzand, S., Mažeika, L., Samaitis, V., Jankauskas, A., Sadaghiani, A. K., Gharib, G., Muganlı, Z. & Koşar, A., 1. Aug 2024, In: Applied Thermal Engineering. 250, 13 p., 123474.

  Research output: Contribution to journal › Journal article › Research › peer-review

• A sedimentary DNA record of the Atacama Trench reveals biodiversity changes in the most productive marine ecosystem

  Rivera Rosas, D. E., Geraldi, N. R., Glud, R. N., Oguri, K., Haond, S. A. & Duarte, C. M., Jul 2024, In: Global Change Biology. 30, 7, 20 p., e17412.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  23 Downloads (Pure)

• Assessing biochar's permanence: An inertinite benchmark

  Sanei, H., Rudra, A., Przyswitt, Z. M. M., Kousted, S., Sindlev, M. B., Zheng, X., Nielsen, S. B. & Petersen, H. I., 5. Jan 2024, In: International Journal of Coal Geology. 281, 20 p., 104409.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  256 Downloads (Pure)

• Brownification in the Eastern Mediterranean Sea: effect of simulated terrestrial input on the planktonic microbial food web in an oligotrophic sea

  Ktistaki, G., Magiopoulos, I., Corno, G., Courboulès, J., Eckert, E. M., González, J., Kalantzi, I., Middelboe, M., Symiakaki, K., Tsapakis, M., Vidussi, F. & Pitta, P., 5. Mar 2024, In: Frontiers in Marine Science. 11, 16 p., 1343415.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  25 Downloads (Pure)

• Denitrification, anammox, and DNRA in oligotrophic continental shelf sediments

  Cheung, H. L. S., Hillman, J. R., Pilditch, C. A., Savage, C., Santos, I. R., Glud, R. N., Nascimento, F. J. A., Thrush, S. F. & Bonaglia, S., Mar 2024, In: Limnology and Oceanography. 69, 3, p. 621-637

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  54 Downloads (Pure)

• Discovery of a new Kinorhyncha species from the uncharted South Orkney Trench (Southern Ocean)

  Sánchez, N., García-Cobo, M., Shimabukuro, M., Zeppilli, D., Nomaki, H. & González-Casarrubios, A., Nov 2024, In: Zoologischer Anzeiger. 313, p. 315-331 17 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  15 Downloads (Pure)

• Distribution of microplastics in bathyal- to hadal-depth sediments and transport process along the deep-sea canyon and the Kuroshio Extension in the Northwest Pacific

  Tsuchiya, M., Kitahashi, T., Nakajima, R., Oguri, K., Kawamura, K., Nakamura, A., Nakano, K., Maeda, Y., Murayama, M., Chiba, S. & Fujikura, K., Feb 2024, In: Marine Pollution Bulletin. 199, 12 p., 115466.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  54 Downloads (Pure)

• Diversification of Pseudomonas aeruginosa Biofilm Populations under Repeated Phage Exposures Decreases the Efficacy of the Treatment

  Martinet, M. G., Lohde, M., Higazy, D., Brandt, C., Pletz, M. W., Middelboe, M., Makarewicz, O. & Ciofu, O., Sept 2024, In: Microorganisms. 12, 9, 20 p., 1880.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  11 Downloads (Pure)

• Editorial: Cross-boundary significance of methanogens -the methane moment and beyond

  Liu, Z., Rotaru, A.-E., Pimentel, M., Zhang, C. J., Rittmann, S. K. M. R. & Ferry, J., Jun 2024, In: Frontiers in Microbiology. 15, 4 p., 1434586.

  Research output: Contribution to journal › Editorial › peer-review

  Open Access

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  5 Downloads (Pure)

• Electrical Current Disrupts the Electron Transfer in Defined Consortia

  Yee, M. O., Ottosen, L. D. M. & Rotaru, A.-E., Jan 2024, In: Microbial Biotechnology. 17, 1, 12 p., e14373.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  26 Downloads (Pure)

• Electricity generation using a microbial 3D bio-anode embedded bio-photovoltaic cell in a microfluidic chamber

  Muganlı, Z., Bütün, İ., Gharib, G. & Koşar, A., Oct 2024, In: Energy Advances. 3, 10, p. 2439-2452

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  37 Downloads (Pure)

• Electrogenic sulfur oxidation by cable bacteria in two seasonally hypoxic coastal systems

  Burdorf, L. D. W., Cook, P. L. M., Robertson, E. K., Tramper, A., Hidalgo-Martinez, S., Vasquez-Cardenas, D., Malkin, S. Y. & Meysman, F. J. R., Feb 2024, In: Estuarine, Coastal and Shelf Science. 297, 12 p., 108615.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

• Element cycling and microbial life in the hadal realm

  Glud, R. N. & Schauberger, C., Nov 2024, In: Trends in Microbiology. 32, 11, p. 1045-1048

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  5 Downloads (Pure)

• Exploring the hadal zone with lab-on-chip sensors

  Brinch-Iversen, L., Oct 2024, In: Nature Reviews Earth and Environment. 5, 10, p. 670 1 p.

  Research output: Contribution to journal › Comment/debate › Research › peer-review

• Fronts divide diazotroph communities in the Southern Indian Ocean

  Chowdhury, S., Berthelot, H., Baudet, C., González-Santana, D., Reeder, C. F., L’Helguen, S., Maguer, J. F., Löscher, C. R., Singh, A., Blain, S., Cassar, N., Bonnet, S., Planquette, H. & Benavides, M., 1. Aug 2024, In: FEMS Microbiology Ecology. 100, 8, 13 p., fiae095.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  11 Downloads (Pure)

• Ground truthing non-traditional metal stable isotope palaeoredox proxies: Cases of Uranium and Thallium

  Olesen, K. P., 15. Aug 2024, Syddansk Universitet. Det Naturvidenskabelige Fakultet. 165 p.

  Research output: Thesis › Ph.D. thesis

  Open Access

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  50 Downloads (Pure)

• Growth, Filtration and Respiration Under Superfluous Feeding in Single-Osculum Halichondria panicea Sponges

  Kumala, L. & Riisgård, H. U., Dec 2024, In: Oceans. 5, 4, p. 965-981

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  3 Downloads (Pure)

• Heterogeneity of nitrogen fixation in the mesopelagic zone of the South China Sea

  Wu, S., Wan, X. S., Du, M., Chen, X., Selden, C. R., Benavides, M., Bonnet, S., Löscher, C. R., Hamersley, M. R., Mulholland, M. R., Yan, X. & Kao, S. J., Nov 2024, In: Frontiers in Marine Science. 11, 13 p., 1495649.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  1 Downloads (Pure)

• Heterogenous distribution and burial flux of black carbon in Chinese lakes and its global implication

  Zhang, X., Wang, Y., Wang, Z., Zhao, M., Fang, Y., Ding, S., Xiao, W., Yu, C., Wang, X. & Xu, Y., 1. Jan 2024, In: Science of the Total Environment. 906, 10 p., 167687.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Hidden seafloor hypoxia in coastal waters

  Fredriksson, J. P., Attard, K., Stranne, C., Koszalka, I. M., Glud, R. N., Andersen, T. J., Humborg, C. & Brüchert, V., Nov 2024, In: Limnology and Oceanography. 69, 11, p. 2489-2502

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  10 Downloads (Pure)