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Author

  • Ole Nørregaard Jensen
2017

A biotin enrichment strategy identifies novel carbonylated amino acids in proteins from human plasma

Havelund, J. F., Wojdyla, K., Davies, M. J., Jensen, O. N., Møller, I. M. & Rogowska-Wrzesinska, A., 3. Jan 2017, In : Journal of Proteomics. 156, p. 40-51

Research output: Contribution to journalJournal articleResearchpeer-review

2018

Unraveling aging related histone PTM patterns by middle-down proteomics

Jensen, O. N., 1. Jul 2018, In : FEBS Open Bio. 8, Suppl. 1, p. 18 1 p.

Research output: Contribution to journalConference abstract in journalResearchpeer-review

2016

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

Williamson, J. C., Edwards, A. V. G., Verano-Braga, T., Schwämmle, V., Kjeldsen, F., Jensen, O. N. & Larsen, M. R., Mar 2016, In : Proteomics. 16, 6, p. 907-914

Research output: Contribution to journalJournal articleResearchpeer-review

2017

Phosphotyrosine biased enrichment of tryptic peptides from cancer cells by combining pY-MIP and TiO2 affinity resins

Bllaci, L., Torsetnes, S. B., Wierzbicka, C. K., Shinde, S., Sellergren, B., Rogowska-Wrzesinska, A. & Jensen, O. N., 2017, In : Analytical Chemistry. 89, 21, p. 11332–11340

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
117 Downloads (Pure)
2018

Extensive Characterization of Heavily Modified Histone Tails by 193 nm Ultraviolet Photodissociation Mass Spectrometry via a Middle-Down Strategy

Greer, S. M., Sidoli, S., Coradin, M., Schack Jespersen, M., Schwämmle, V., Jensen, O. N., Garcia, B. A. & Brodbelt, J. S., Sep 2018, In : Analytical Chemistry. 90, 17, p. 10425–10433

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
91 Downloads (Pure)

Elucidation of histone proteoform dynamics during aging by using middle-down mass spectrometry

Jensen, O. N., 2018.

Research output: Contribution to conference without publisher/journalPosterResearch

2020

Visualization of the dynamics of histone modifications and their crosstalk using PTM-CrossTalkMapper

Kirsch, R., Jensen, O. N. & Schwämmle, V., 1. Jan 2020, (Accepted/In press) In : Methods.

Research output: Contribution to journalJournal articleResearchpeer-review

2019

PRMT5 methylome profiling uncovers a direct link to splicing regulation in acute myeloid leukemia

Radzisheuskaya, A., Shliaha, P. V., Grinev, V., Lorenzini, E., Kovalchuk, S., Shlyueva, D., Gorshkov, V., Hendrickson, R. C., Jensen, O. N. & Helin, K., Nov 2019, In : Nature Structural and Molecular Biology. 26, 11, p. 999-1012 32 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2017

Characterization of Complete Histone Tail Proteoforms Using Differential Ion Mobility Spectrometry

Shliaha, P. V., Baird, M. A., Nielsen, M. M., Gorshkov, V., Bowman, A. P., Kaszycki, J. L., Jensen, O. N. & Shvartsburg, A. A., 2017, In : Analytical Chemistry. 89, 10, p. 5461-5466

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
155 Downloads (Pure)
2019

FlashPack: Fast and simple preparation of ultra-high performance capillary columns for LC-MS

Kovalchuk, S. I., Jensen, O. N. & Rogowska-Wrzesinska, A., 1. Feb 2019, In : Molecular and Cellular Proteomics. 18, 2, p. 383-390

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
108 Downloads (Pure)
2018

Accurate H3K27 methylation can be established de novo by SUZ12-directed PRC2

Højfeldt, J. W., Laugesen, A., Willumsen, B. M., Damhofer, H., Hedehus, L., Tvardovskiy, A., Mohammad, F., Jensen, O. N. & Helin, K., 1. Mar 2018, In : Nature Structural and Molecular Biology. 25, 3, p. 225-232

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
129 Downloads (Pure)
2017

Abnormal levels of histone methylation in the retinas of diabetic rats are reversed by minocycline treatment

Wang, W., Sidoli, S., Zhang, W., Wang, Q., Wang, L., Jensen, O. N., Guo, L., Zhao, X. & Zheng, L., 2017, In : Scientific Reports. 7, 14 p., 45103.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
182 Downloads (Pure)
2016

Subcompartmentalization by cross-membranes during early growth of Streptomyces hyphae

Yagüe, P., Willemse, J., Koning, R. I., Rioseras, B., López-García, M. T., Gonzalez-Quiñonez, N., Lopez-Iglesias, C., Shliaha, P. V., Rogowska-Wrzesinska, A., Koster, A. J., Jensen, O. N., van Wezel, G. P. & Manteca, Á., 2016, In : Nature Communications. 7, 12467, 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
208 Downloads (Pure)

Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation

Schwämmle, V., Sidoli, S., Ruminowicz, C., Wu, X., Lee, C-F., Helin, K. & Jensen, O. N., 2016, In : Molecular and Cellular Proteomics. 15, 8, p. 2715-2729

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
318 Downloads (Pure)

Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle-down proteomics

Sidoli, S., Vandamme, J., Salcini, A. E. & Jensen, O. N., 2016, In : Proteomics. 16, 3, p. 459–464

Research output: Contribution to journalJournal articleResearchpeer-review

2018

Distinct Roles of Two Histone Methyltransferases in Transmitting H3K36me3-Based Epigenetic Memory Across Generations in Caenorhabditis elegans

Kreher, J., Takasaki, T., Cockrum, C., Sidoli, S., Garcia, B. A., Jensen, O. N. & Strome, S., 1. Nov 2018, In : Genetics. 210, 3, p. 969-982

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
85 Downloads (Pure)
2017

EZH2 is a potential therapeutic target for H3K27M-mutant pediatric gliomas

Mohammad, F., Weissmann, S., Leblanc, B., Pandey, D. P., Højfeldt, J. W., Comet, I., Zheng, C., Johansen, J. V., Rapin, N., Porse, B. T., Tvardovskiy, A., Jensen, O. N., Olaciregui, N. G., Lavarino, C., Suñol, M., De Torres, C., Mora, J., Carcaboso, A. M. & Helin, K., 2017, In : Nature Medicine. 23, 4, p. 483-492

Research output: Contribution to journalJournal articleResearchpeer-review

2018

The tumor suppressor CIC directly regulates MAPK pathway genes via histone deacetylation

Weissmann, S., Cloos, P. A., Sidoli, S., Jensen, O. N., Pollard, S. & Helin, K., 2018, In : Cancer Research. 78, 15, p. 4114-4125

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access

Quantitative proteome and phosphoproteome analyses of Streptomyces coelicolor reveal proteins and phosphoproteins modulating differentiation and secondary metabolism

Rioseras, B., Sliaha, P. V., Gorshkov, V., Yagüe, P., López-García, M. T., González-Quiñónez, N., Kovalchuk, S., Rogowska-Wrzesinska, A., Jensen, O. N. & Manteca, A., 1. Aug 2018, In : Molecular and Cellular Proteomics. 17, 8, p. 1591-1611

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
113 Downloads (Pure)
2017

Hierarchically templated beads with tailored pore structure for phosphopeptide capture and phosphoproteomics

Wierzbicka, C., Torsetnes, S. B., Jensen, O. N., Shinde, S. & Sellergren, B., 2017, In : RSC Advances. 7, 28, p. 17154-17163 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
145 Downloads (Pure)
2018

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., MacCoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., 14. Feb 2018, In : Nature Chemical Biology. 14, 3, p. 206-214

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
104 Downloads (Pure)
2017

Nuclear phosphoproteome analysis of 3T3-L1 preadipocyte differentiation reveals system-wide phosphorylation of transcriptional regulators

Rabiee, A., Schwämmle, V., Sidoli, S., Dai, J., Rogowska-Wrzesinska, A., Mandrup, S. & Jensen, O. N., 2017, In : Proteomics. 17, 6, 5 p., 1600248.

Research output: Contribution to journalJournal articleResearchpeer-review

2018

Phosphoproteomics in Microbiology: Protocols for Studying Streptomyces coelicolor Differentiation

Manteca, A., Rioseras, B., Rogowska-Wrzesinska, A. & Jensen, O. N., 2018, Microbial Proteomics: Methods and Protocols. Becher, D. (ed.). Humana Press, Vol. 1841. p. 249-260 (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

Evaluation of sample preparation methods for mass spectrometry-based proteomic analysis of barley leaves

Wang, W. Q., Jensen, O. N., Møller, I. M., Hebelstrup, K. H. & Rogowska-Wrzesinska, A., 25. Aug 2018, In : Plant Methods. 14, 1, p. 1-13 72.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
138 Downloads (Pure)
2019

High-Resolution Differential Ion Mobility Separations/Orbitrap Mass Spectrometry without Buffer Gas Limitations

Baird, M. A., Shliaha, P. V., Anderson, G. A., Moskovets, E., Laiko, V., Makarov, A. A., Jensen, O. N. & Shvartsburg, A. A., 21. May 2019, In : Analytical Chemistry. 91, 10, p. 6918-6925

Research output: Contribution to journalJournal articleResearchpeer-review

Selective enrichment of phosphorylated peptides by monolithic polymers surface imprinted with bis-imidazolium moieties by UV-initiated cryopolymerization

Liu, M., Torsetnes, S. B., Wierzbicka, C., Jensen, O. N., Sellergren, B. & Irgum, K., 2019, In : Analytical Chemistry. 91, 15, p. 10188-10196

Research output: Contribution to journalJournal articleResearchpeer-review

2017

Molecularly Imprinted Porous Monolithic Materials from Melamine-Formaldehyde for Selective Trapping of Phosphopeptides

Liu, M., Tran, T. M., Abbas Elhaj, A. A., Bøen Torsetnes, S., Jensen, O. N., Sellergren, B. & Irgum, K., 2017, In : Analytical Chemistry. 89, 17, p. 9491-9501

Research output: Contribution to journalJournal articleResearchpeer-review

2018

VSClust: Feature-based variance-sensitive clustering of omics data

Schwämmle, V. & Jensen, O. N., Sep 2018, In : Bioinformatics. 34, 17, p. 2965–2972

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
51 Downloads (Pure)

Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics

Bergauer, K., Fernandez-Guerra, A., Garcia, J. A. L., Sprenger, R. R., Stepanauskas, R., Pachiadaki, M. G., Jensen, O. N. & Herndl, G. J., 16. Jan 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 3, p. E400-E408

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
95 Downloads (Pure)
2020

Middle-Down Proteomic Analyses with Ion Mobility Separations of Endogenous Isomeric Proteoforms

Shliaha, P. V., Gorshkov, V., Kovalchuk, S. I., Schwämmle, V., Baird, M. A., Shvartsburg, A. A. & Jensen, O. N., 4. Feb 2020, In : Analytical chemistry. 92, 3, p. 2364-2368

Research output: Contribution to journalJournal articleResearchpeer-review

2019

Differential Ion Mobility Separations/Mass Spectrometry with High Resolution in Both Dimensions

Baird, M. A., Anderson, G. A., Shliaha, P. V., Jensen, O. N. & Shvartsburg, A. A., 15. Jan 2019, In : Analytical Chemistry. 91, 2, p. 1479-1485 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
46 Downloads (Pure)
2017

Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape

Tvardovskiy, A., Schwämmle, V., Kempf, S. J., Rogowska-Wrzesinska, A. & Jensen, O. N., 2017, In : Nucleic Acids Research. 45, 16, p. 9272-9289

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
206 Downloads (Pure)
2018

Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multi-modal Gas-phase Protein Fragmentation

Shliaha, P. V., Gibb, S., Gorshkov, V., Jespersen, M. S., Andersen, G. R., Bailey, D., Schwartz, J., Eliuk, S., Schwämmle, V. & Jensen, O. N., 25. Sep 2018, In : Analytical Chemistry. 90, 21, p. 12519-12526

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
81 Downloads (Pure)

Linear and Differential Ion Mobility Separations of Middle-Down Proteoforms

Garabedian, A., Baird, M. A., Porter, J., Jeanne Dit Fouque, K., Shliaha, P. V., Jensen, O. N., Williams, T. D., Fernandez-Lima, F. & Shvartsburg, A. A., 2018, In : Analytical Chemistry. 90, 4, p. 2918-2925

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
134 Downloads (Pure)