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Personal profile

Research areas

Computational Biology. Bioinformatics. Algorithms for Big Data.

Research information

My research interests are in computational molecular biology, with a focus on problems involving massive data sets. I am interested in the design of efficient and mathematically well-founded computational techniques to solve problems that arise in the analysis of massive biological data, such as the ones produced by next-generation sequencing technologies. While my primary focus is computational biology, I am also interested in other areas involving big data, such as data mining and large network analysis.

Research areas

  • Bioinformatics
  • Computational Biology
  • Algorithms for Large Datasets
  • Big Data Analytics

Fingerprint Dive into the research topics where Fabio Vandin is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

  • 15 Similar Profiles
Neoplasms Medicine & Life Sciences
Mutation Medicine & Life Sciences
Genes Engineering & Materials Science
Dizygotic Twins Medicine & Life Sciences
Libraries Medicine & Life Sciences
Genome-Wide Association Study Medicine & Life Sciences
Sample Size Medicine & Life Sciences
Precision Medicine Medicine & Life Sciences

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Research Output 2007 2019

54 Downloads (Pure)

CoExpresso: Assess the quantitative behavior of protein complexes in human cells

Chalabi, M. H., Tsiamis, V., Käll, L., Vandin, F. & Schwämmle, V., 9. Jan 2019, In : BMC Bioinformatics. 20, 1, p. 1-10 17.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Cells
Proteins
Protein
Cell
Scoring
18 Downloads (Pure)

Efficient algorithms to discover alterations with complementary functional association in cancer

Basso, R. S., Hochbaum, D. S. & Vandin, F., 1. May 2019, In : PloS Computational Biology. 15, 5, 24 p., e1006802.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
cancer
Cancer
Efficient Algorithms
Genes
neoplasms
6 Downloads (Pure)

Enriched power of disease-concordant twin-case-only design in detecting interactions in genome-wide association studies

Li, W., Baumbach, J., Mohammadnejad, A., Brasch-Andersen, C., Vandin, F., Korbel, J. O. & Tan, Q., 1. Apr 2019, In : European Journal of Human Genetics. 27, 4, p. 631-636

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Dizygotic Twins
Genome-Wide Association Study
Sample Size
Siblings
Monozygotic Twins
13 Downloads (Pure)

NoMAS: A computational approach to find mutated subnetworks associated with survival in genome-wide cancer studies

Altieri, F., Hansen, T. V. & Vandin, F., Apr 2019, In : Frontiers in Genetics. 10, 12 p., 265.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Mutation
Neoplasms
Genetic Heterogeneity
Color
Population
112 Downloads (Pure)

De novo pathway-based biomarker identification

Alcaraz, N., List, M., Batra, R., Vandin, F., Ditzel, H. J. & Baumbach, J., 2017, In : Nucleic Acids Research. 45, 16, 11 p., e151.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Neoplasms
Benchmarking
Transcriptome
Datasets

Activities 2013 2014

  • 9 Peer review of manuscripts
  • 4 Talks and presentations in private or public companies
  • 3 Conference organisation or participation

Talk: Computational Problems in Cancer Genomics: Towards the ground truth: Exact algorithms for bioinformatics research

Fabio Vandin (Speaker)
3. Oct 2014

Activity: Talks and presentationsTalks and presentations in private or public companies

PhD school in Computer Science talk (Pisa, Italy): Algorithms to Find Significant Mutations and Pathways in Cancer Genomes

Fabio Vandin (Lecturer)
22. Sep 2014

Activity: Talks and presentationsTalks and presentations in private or public companies

International Workshop on Big Data and Life Sciences

Fabio Vandin (Organizer)
20. Sep 2014

Activity: Attending an eventConference organisation or participation

ECML-PKDD (Journal)

Fabio Vandin (Peer reviewer)
15. Sep 201419. Sep 2014

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

International Conference on Intelligent Systems for Molecular Biology

Fabio Vandin (Participant)
10. Jul 201415. Jul 2014

Activity: Attending an eventConference organisation or participation