Jakob Lykke Andersen

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Jakob Lykke Andersen

 https://orcid.org/0000-0002-4165-3732
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  • 2023

    On the Realisability of Chemical Pathways

    Andersen, J. L., Banke, S., Fagerberg, R., Flamm, C., Merkle, D. & Stadler, P. F., 2023, Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Proceedings. Guo, X., Mangul, S., Patterson, M. & Zelikovsky, A. (eds.). Springer Science+Business Media, p. 409-419 (Lecture Notes in Computer Science, Vol. 14248).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  • Reconciling Inconsistent Molecular Structures from Biochemical Databases

    Eriksen, C. A., Andersen, J. L., Fagerberg, R. & Merkle, D., 2023, Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Proceedings. Guo, X., Mangul, S., Patterson, M. & Zelikovsky, A. (eds.). Springer Science+Business Media, p. 58-71 (Lecture Notes in Computer Science, Vol. 14248).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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  • 2020

    Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases

    da Silva, W. M. C., de Andrade, D. P., Andersen, J. L., Walter, M. E. M. T., Brigido, M., Stadler, P. F. & Flamm, C., 2020, Advances in Bioinformatics and Computational Biology - 13th Brazilian Symposium on Bioinformatics, BSB 2020, Proceedings. Setubal, J. C. & Silva, W. M. (eds.). Springer Science+Business Media, p. 247-258 (Lecture Notes in Computer Science, Vol. 12558 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  • 2019

    Graph Transformations, Semigroups, and Isotopic Labeling

    Andersen, J. L., Merkle, D. & Rasmussen, P. S., 2019, Bioinformatics Research and Applications. ISBRA 2019. Cai, Z., Skums, P. & Li, M. (eds.). Springer, p. 196-207 (Lecture Notes in Computer Science, Vol. 11490).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  • 2018

    A generic framework for engineering graph canonization algorithms

    Andersen, J. L. & Merkle, D., Jan 2018, 2018 Proceedings of the 20th Workshop on Algorithm Engineering and Experiments, ALENEX 2018. Venkatasubramanian, S. & Pagh, R. (eds.). Society for Industrial and Applied Mathematics, p. 139-153

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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    225 Downloads (Pure)
  • 2017

    Chemical Graph Transformation with Stereo-Information

    Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2017, Graph Transformation - 10th International Conference, ICGT 2017 Held as Part of STAF 2017, Proceedings: Proceedings of the 10th International Conference on Graph Transformation. Plump, D. & de Lara, J. (eds.). Cham: Springer, p. 54-69 (Lecture Notes in Computer Science, Vol. 10373).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  • 2016

    A Software Package for Chemically Inspired Graph Transformation

    Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2016, Graph Transformation: Proceedings of the 9th International Conference on Graph Transformation. Echahed, R. & Minas, M. (eds.). Springer, p. 73-88 (Lecture Notes in Computer Science, Vol. 9761).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  • 2014

    50 Shades of Rule Composition: From Chemical Reactions to Higher Levels of Abstraction

    Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2014, Formal Methods in Macro-Biology: Proceedings of the First International Conference, FMMB 2014, Nouméa, New Caledonia, September 22-24, 2014. Fages, F. & Piazza, C. (eds.). Springer, p. 117-135 (Lecture Notes in Computer Science, Vol. 8738).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  • Towards an Optimal DNA-Templated Molecular Assembler

    Andersen, J. L., Flamm, C., Hanczyc, M. M. & Merkle, D., 30. Jul 2014, Artificial Life 14: Proceedings of the Fourteenth Conference on the Synthesis and Simulation of Living Systems. Sayama, H., Rieffel, J., Risi, S., Doursat, R. & Lipson, H. (eds.). MIT Press, p. 557-564

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review