Jakob Lykke Andersen

  • Campusvej 55

    5230 Odense M

    Denmark

20122019
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Personal profile

External positions

Research Fellow, Tokyo Institute of Technology

Sep 2015Sep 2017

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Research Output 2012 2019

  • 11 Journal article
  • 6 Article in proceedings
  • 1 Ph.D. thesis
  • 1 Book chapter
52 Downloads (Pure)

Chemical transformation motifs: modelling pathways as integer hyperflows

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 1. Mar 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 2, p. 510-523

Research output: Contribution to journalJournal articleResearchpeer-review

File
Glycolysis
Metabolic Networks and Pathways
Pathway
Integer
Electric network analysis
8 Downloads (Pure)

Exploring Plant Sesquiterpene Diversity by Generating Chemical Networks

Silva, W. M. C. D., Andersen, J. L., Holanda, M. T., Walter, M. E. M. T., Brigido, M. M., Stadler, P. F. & Flamm, C., 2019, In : Processes. 7, 4, 18 p., 240.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Sesquiterpenes
Biosynthesis
Cyclization
Software packages

Graph Transformations, Semigroups, and Isotopic Labeling

Andersen, J. L., Merkle, D. & Rasmussen, P. S., 2019, Bioinformatics Research and Applications. ISBRA 2019. Cai, Z., Skums, P. & Li, M. (eds.). Springer, p. 196-207 (Lecture Notes in Computer Science, Vol. 11490).

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

Labeling
Chemical reactions
Atoms
Chemical compounds
Pyruvic Acid

Information Processing in Chemical Systems

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2019, The Energetics of Computing in Life and Machines. Wolpert, D. H., Kempes, C., Stadler, P. F. & Grochow, J. A. (eds.). SFI Press

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

57 Downloads (Pure)

A generic framework for engineering graph canonization algorithms

Andersen, J. L. & Merkle, D., Jan 2018, 2018 Proceedings of the 20th Workshop on Algorithm Engineering and Experiments, ALENEX 2018. Venkatasubramanian, S. & Pagh, R. (eds.). Society for Industrial and Applied Mathematics Publications, p. 139-153

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

File
Visualization

Activities 2013 2016

  • 4 Conference organisation or participation
  • 4 Talks and presentations in private or public companies
  • 1 Organisation or participation in workshops, courses or seminars
  • 1 Conference presentations

A Software Package for Chemically Inspired Graph Transformation

Jakob Lykke Andersen (Speaker)
5. Jul 2016

Activity: Talks and presentationsTalks and presentations in private or public companies

9th International Conference on Graph Transformation

Jakob Lykke Andersen (Speaker)
5. Jul 20166. Jul 2016

Activity: Talks and presentationsConference presentations

8th Slovenian Conference on Graph Theory

Jakob Lykke Andersen (Participant)
21. Jun 201527. Jun 2015

Activity: Attending an eventConference organisation or participation

Dagstuhl Seminar - Algorithmic Cheminformatics

Jakob Lykke Andersen (Participant)
2. Nov 20147. Nov 2014

Activity: Attending an eventOrganisation or participation in workshops, courses or seminars

ALife 14

Jakob Lykke Andersen (Participant)
30. Jul 20142. Aug 2014

Activity: Attending an eventConference organisation or participation