• Campusvej 55

    5230 Odense M

    Denmark

1992 …2025
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Research Output 1992 2019

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Journal article
2019

Rab35 controls cilium length, function and membrane composition

Kuhns, S., Seixas, C., Pestana, S., Tavares, B., Nogueira, R., Jacinto, R., Ramalho, J. S., Simpson, J. C., Andersen, J. S., Echard, A., Lopes, S. S., Barral, D. C. & Blacque, O. E., 4. Oct 2019, In : EMBO Reports. 20, 10, 23 p., e47625.

Research output: Contribution to journalJournal articleResearchpeer-review

Cilia
Hedgehogs
Membranes
GTP-Binding Proteins
Chemical analysis
18 Downloads (Pure)

Selective autophagy maintains centrosome integrity and accurate mitosis by turnover of centriolar satellites

Holdgaard, S. G., Cianfanelli, V., Pupo, E., Lambrughi, M., Lubas, M., Nielsen, J. C., Eibes, S., Maiani, E., Harder, L. M., Wesch, N., Foged, M. M., Maeda, K., Nazio, F., de la Ballina, L. R., Dötsch, V., Brech, A., Frankel, L. B., Jäättelä, M., Locatelli, F., Barisic, M. & 8 others, Andersen, J. S., Bekker-Jensen, S., Lund, A. H., Rogov, V. V., Papaleo, E., Lanzetti, L., De Zio, D. & Cecconi, F., 2019, In : Nature Communications. 10, p. 4176 19 p., 4176.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Homeostasis
Neoplasms
2018
104 Downloads (Pure)

CEP128 Localizes to the Subdistal Appendages of the Mother Centriole and Regulates TGF-β/BMP Signaling at the Primary Cilium

Mönnich, M., Borgeskov, L., Breslin, L., Jakobsen, L., Rogowski, M., Doganli, C., Schrøder, J. M., Mogensen, J. B., Blinkenkjær, L., Harder, L. M., Lundberg, E., Geimer, S., Christensen, S. T., Andersen, J. S., Larsen, L. A. & Pedersen, L. B., 6. Mar 2018, In : Cell Reports. 22, 10, p. 2584-2592

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Centrioles
Bone Morphogenetic Proteins
Cilia
Transforming Growth Factors
Cells
127 Downloads (Pure)

Characterizing ZC3H18, a Multi-domain Protein at the Interface of RNA Production and Destruction Decisions

Winczura, K., Schmid, M., Iasillo, C., Molloy, K. R., Harder, L. M., Andersen, J. S., LaCava, J. & Jensen, T. H., 2. Jan 2018, In : Cell Reports. 22, 1, p. 44-58

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
RNA
Exosomes
Nuclear RNA
Proteins
Genes

DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy

Bennetzen, M. V., Kosar, M., Bunkenborg, J., Payne, M. R., Bartkova, J., Lindström, M. S., Lukas, J., Andersen, J. S., Bartek, J. & Larsen, D. H., Sep 2018, In : Cell Cycle. 17, 17, p. 2146-2163

Research output: Contribution to journalJournal articleResearchpeer-review

Nuclear Proteins
Cytosol
Ribosomal Proteins
Proteins
Cathepsins

eIF5A is required for autophagy by mediating ATG3 translation

Lubas, M., Harder, L. M., Kumsta, C., Tiessen, I., Hansen, M., Andersen, J. S., Lund, A. H. & Frankel, L. B., 2018, In : E M B O Reports. 19, 6, 17 p., e46072.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
Proteins
Transcription
Ubiquitin
Recycling
Throughput
91 Downloads (Pure)

IFT20 modulates ciliary PDGFRα signaling by regulating the stability of Cbl E3 ubiquitin ligases

Schmid, F. M., Schou, K. B., Vilhelm, M. J., Holm, M. S., Breslin, L., Farinelli, P., Larsen, L. A., Andersen, J. S., Pedersen, L. B. & Christensen, S. T., 2. Jan 2018, In : The Journal of Cell Biology. 217, 1, p. 151-161

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Ubiquitin-Protein Ligases
Cilia
Ligands
Cell Membrane
Neoplasms
2017

Degradation of protein translation machinery by amino acid starvation-induced macroautophagy

Gretzmeier, C., Eiselein, S., Johnson, G. R., Engelke, R., Nowag, H., Zarei, M., Küttner, V., Becker, A. C., Rigbolt, K. T. G., Høyer-Hansen, M., Andersen, J. S., Münz, C., Murphy, R. F. & Dengjel, J., 2017, In : Autophagy. 13, 6, p. 1064-1075

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
Amino Acids
Proteolysis
Proteins
Autophagosomes
138 Downloads (Pure)

Mutually Exclusive CBC-Containing Complexes Contribute to RNA Fate

Giacometti, S., Benbahouche, N. E. H., Domanski, M., Robert, M. C., Meola, N., Lubas, M., Bukenborg, J., Andersen, J. S., Schulze, W. M., Verheggen, C., Kudla, G., Jensen, T. H. & Bertrand, E., 2017, In : Cell Reports. 18, 11, p. 2635-2650

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
RNA
RNA Transport
Small Nucleolar RNA
Small Nuclear RNA
Degradation
2016

Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts

Meola, N., Domanski, M., Karadoulama, E., Chen, Y., Gentil, C., Pultz, D., Vitting-Seerup, K., Lykke-Andersen, S., Andersen, J. S., Sandelin, A. G. & Jensen, T. H., 2016, In : Molecular Cell. 64, 3, p. 520-533

Research output: Contribution to journalJournal articleResearchpeer-review

203 Downloads (Pure)

SDCCAG8 interacts with rab effector proteins rabep2 and erc1 and is required for hedgehog signaling

Airik, R., Schueler, M., Airik, M., Cho, J., Ulanowicz, K. A., Porath, J. D., Hurd, T. W., Bekker-Jensen, S., Schrøder, J. M., Andersen, J. S. & Hildebrandt, F., 2016, In : P L o S One. 11, 5, 19 p., e0156081.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2015

Regulated assembly of a supramolecular centrosome scaffold in vitro

Woodruff, J. B., Wueseke, O., Viscardi, V., Mahamid, J., Ochoa, S. D., Bunkenborg, J., Widlund, P. O., Pozniakovsky, A., Zanin, E., Bahmanyar, S., Zinke, A., Hong, S. H., Decker, M., Baumeister, W., Andersen, J. S., Oegema, K. & Hyman, A. A., 2015, In : Science. 348, 6236, p. 808-812

Research output: Contribution to journalJournal articleResearchpeer-review

Treatment of non-IBD anal fistula

Lundby, L., Hagen, K., Christensen, P., Buntzen, S., Thorlacius-Ussing, O., Andersen, J., Krupa, M. & Qvist, N., May 2015, In : Danish Medical Journal. 62, 5, C5088.

Research output: Contribution to journalJournal articleResearchpeer-review

Cutaneous Fistula
Evidence-Based Medicine
2014

A divergent calponin homology (NN-CH) domain defines a novel family: Implications for evolution of ciliary IFT complex B proteins

Schou, K. B., Andersen, J. S. & Pedersen, L. B., 2014, In : Bioinformatics. 30, 7, p. 899-902

Research output: Contribution to journalJournal articleResearchpeer-review

Kinetochores
Proteins
Terminal Repeat Sequences
Tubulin
Computational Biology

ANCHR mediates Aurora-B-dependent abscission checkpoint control through retention of VPS4

Thoresen, S. B., Campsteijn, C., Vietri, M., Schink, K. O., Liestøl, K., Andersen, J. S., Raiborg, C. & Stenmark, H., Jun 2014, In : Nature Cell Biology. 16, 6, p. 547-559

Research output: Contribution to journalJournal articleResearchpeer-review

Endosomal Sorting Complexes Required for Transport
Cytokinesis
Adenosine Triphosphatases
Membranes
DNA

Characterization of early autophagy signaling by quantitative phosphoproteomics

Rigbolt, K. T., Zarei, M., Sprenger, A., Becker, A. C., Diedrich, B., Huang, X., Eiselein, S., Kristensen, A. R., Gretzmeier, C., Andersen, J. S., Zi, Z. & Dengjel, J., 2014, In : Autophagy. 10 , 2, p. 356 - 371

Research output: Contribution to journalJournal articleResearchpeer-review

Computational Biology
Proteins
Food

Inducing autophagy: A comparative phosphoproteomic study of the cellular response to ammonia and rapamycin

Harder, L. M., Bunkenborg, J. & Andersen, J. S., 2014, In : Autophagy. 10, 2, p. 339 - 355

Research output: Contribution to journalJournal articleResearchpeer-review

Ammonia
Proteins
AMP-Activated Protein Kinases
Poisons
Phosphoproteins

Quantitative proteomics identifies unanticipated regulators of nitrogen- and glucose starvation

Rødkær, S. V., Pultz, D., Brusch, M., Bennetzen, M. V., Falkenby, L. G., Andersen, J. S. & Færgeman, N. J., 1. Jul 2014, In : Chemical Communications. 10, 8, p. 2176-2188 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Glucose
Nitrogen
Yeast
Nutrients
Phosphorylation

Regulation of autophagy by cytosolic acetyl-coenzyme A

Mariño, G., Pietrocola, F., Eisenberg, T., Kong, Y., Malik, S. A., Andryushkova, A., Schroeder, S., Pendl, T., Harger, A., Niso-Santano, M., Zamzami, N., Scoazec, M., Durand, S., Enot, D. P., Fernández, Á. F., Martins, I., Kepp, O., Senovilla, L., Bauvy, C., Morselli, E. & 12 others, Vacchelli, E., Bennetzen, M., Magnes, C., Sinner, F., Pieber, T., López-Otín, C., Maiuri, M. C., Codogno, P., Andersen, J. S., Hill, J. A., Madeo, F. & Kroemer, G., 6. Mar 2014, In : Molecular Cell. 53, 5, p. 710-25 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Acetyl Coenzyme A
Acetylation
Nutritional Status
Cultured Cells
Proteins

Renal-Retinal Ciliopathy Gene Sdccag8 Regulates DNA Damage Response Signaling

Airik, R., Slaats, G. G., Guo, Z., Weiss, A-C., Khan, N., Ghosh, A., Hurd, T. W., Bekker-Jensen, S., Schrøder, J. M., Elledge, S. J., Andersen, J. S., Kispert, A., Castelli, M., Boletta, A., Giles, R. H. & Hildebrandt, F., 10. Apr 2014, In : Journal of the American Society of Nephrology. 25, 11, p. 2573-2583

Research output: Contribution to journalJournal articleResearchpeer-review

Retinaldehyde
Retinal Degeneration
Kidney
Pathology
Retinal Cone Photoreceptor Cells

The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix

Wueseke, O., Bunkenborg, J., Hein, M. Y., Zinke, A., Viscardi, V., Woodruff, J. B., Oegema, K., Mann, M., Andersen, J. S. & Hyman, A. A., 1. Oct 2014, In : Molecular Biology of the Cell. 25, 19, p. 2984-92 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Caenorhabditis elegans
Centrioles
Hydrodynamics
Proteins
Embryonic Structures
2013

Acetylation dynamics of human nuclear proteins during the ionizing radiation-induced DNA damage response

Bennetzen, M. V., Larsen, D. H., Dinant, C., Watanabe, S., Bartek, J., Lukas, J. & Andersen, J. S., 2013, In : Cell Cycle. 12, 11, p. 1688-1695

Research output: Contribution to journalJournal articleResearchpeer-review

Acetylation
Nuclear Proteins
Proteins
Lysine
DNA-Binding Proteins

Protein tyrosine phosphatase SHP2/PTPN11 mistargeting as a consequence of SH2-domain point mutations associated with Noonan Syndrome and leukemia

Müller, P. J., Rigbolt, K. T. G., Paterok, D., Piehler, J., Vanselow, J., Lasonder, E., Andersen, J. S., Schaper, F. & Sobota, R. M., 2013, In : Journal of Proteomics. 84, 12, p. 132-47

Research output: Contribution to journalJournal articleResearchpeer-review

Noonan Syndrome
Protein Tyrosine Phosphatases
src Homology Domains
Point Mutation
Leukemia

The human cap-binding complex is functionally connected to the nuclear RNA exosome

Andersen, P. R., Domanski, M., Kristiansen, M. S., Storvall, H., Ntini, E., Verheggen, C., Schein, A., Bunkenborg, J., Poser, I., Hallais, M., Sandberg, R., Hyman, A., Lacava, J., Rout, M. P., Andersen, J. S., Bertrand, E. & Jensen, T. H., 2013, In : Nature Structural and Molecular Biology. 20, 12, p. 1367-1376

Research output: Contribution to journalJournal articleResearchpeer-review

Exosomes
Nuclear RNA
RNA
Nuclear Proteins
2012

Advancing cell biology through proteomics in space and time (PROSPECTS)

Lamond, A. I., Uhlen, M., Horning, S., Makarov, A., Robinson, S. C., Serrano, L., Hartl, F. U., Baumeister, W., Werenskiold, A. K., Andersen, J. S., Vorm, O., Linial, M., Aebersold, R. & Mann, M., 2012, In : Molecular and Cellular Proteomics. 11, 3, p. O112.017731

Research output: Contribution to journalJournal articleResearchpeer-review

Cytology
Cell Biology
Specifications
Proteins
Proteome

Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling

Chaki, M., Airik, R., Ghosh, A. K., Giles, R. H., Chen, R., Slaats, G. G., Wang, H., Hurd, T. W., Zhou, W., Cluckey, A., Gee, H. Y., Ramaswami, G., Hong, C-J., Hamilton, B. A., Cervenka, I., Ganji, R. S., Bryja, V., Arts, H. H., van Reeuwijk, J., Oud, M. M. & 53 others, Letteboer, S. J. F., Roepman, R., Husson, H., Ibraghimov-Beskrovnaya, O., Yasunaga, T., Walz, G., Eley, L., Sayer, J. A., Schermer, B., Liebau, M. C., Benzing, T., Le Corre, S., Drummond, I., Janssen, S., Allen, S. J., Natarajan, S., O'Toole, J. F., Attanasio, M., Saunier, S., Antignac, C., Koenekoop, R. K., Ren, H., Lopez, I., Nayir, A., Stoetzel, C., Dollfus, H., Massoudi, R., Gleeson, J. G., Andreoli, S. P., Doherty, D. G., Lindstrad, A., Golzio, C., Katsanis, N., Pape, L., Abboud, E. B., Al-Rajhi, A. A., Lewis, R. A., Omran, H., Lee, E. Y-H. P., Wang, S., Sekiguchi, J. M., Saunders, R., Johnson, C. A., Garner, E., Vanselow, K., Andersen, J. S., Shlomai, J., Nurnberg, G., Nurnberg, P., Levy, S., Smogorzewska, A., Otto, E. A. & Hildebrandt, F., 2012, In : Cell Stem Cell. 150, 3, p. 533-48 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Exome
Kidney
Mutation
Kidney Diseases
Retina

Friend or food: Different cues to the autophagosomal proteome

Becker, A. C., Bunkenborg, J., Eisenberg, T., Harder, L. M., Schroeder, S., Madeo, F., Andersen, J. S. & Dengjel, J., 2012, In : Autophagy. 8, 6, p. 995-996

Research output: Contribution to journalJournal articleResearch

Proteome
Cues
Food
Proteins
Constitution and Bylaws

Global mapping of protein phosphorylation events identifies Ste20, Sch9 and the cell-cycle regulatory kinases Cdc28/Pho85 as mediators of fatty acid starvation responses in Saccharomyces cerevisiae

Pultz, D., Bennetzen, M. V., Rødkær, S. V., Zimmermann, C., Enserink, J. M., Andersen, J. S. & Færgeman, N. J., 2012, In : Molecular BioSystems. 8, 3, p. 796-803

Research output: Contribution to journalJournal articleResearchpeer-review

Saccharomyces cerevisiae
Cell Cycle
Fatty Acids
Proteins
Cerulenin

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens

Dengjel, J., Høyer-Hansen, M., Nielsen, M., Eisenberg, T., Harder, L. M., Schandorff, S., Farkas, T., Kirkegaard, T., Becker, A. C., Schroeder, S., Vanselow, K., Lundberg, E., Nielsen, M. M., Kristensen, A. R., Akimov, V., Bunkenborg, J., Madeo, F., Jäättelä, M. & Andersen, J. S., 2012, In : Molecular and Cellular Proteomics. 11, 3, p. M111.014035

Research output: Contribution to journalJournal articleResearchpeer-review

Proteins
Gene encoding
Proteasome Endopeptidase Complex
Sirolimus
Yeast

Mass spectrometric identification of proteins that interact through specific domains of the poly(A) binding protein

Richardson, R., Denis, C. L., Zhang, C., Nielsen, M. E. O., Chiang, Y-C., Kierkegaard, M., Wang, X., Lee, D. J., Andersen, J. S. & Yao, G., 2012, In : Molecular Genetics and Genomics. 287, 9, p. 711-730

Research output: Contribution to journalJournal articleResearchpeer-review

Proteins
Poly(A)-Binding Protein I
Translational Peptide Chain Initiation
Peptide Initiation Factors
Eukaryotic Cells

Phosphoproteomic analysis of cells treated with longevity-related autophagy inducers

Bennetzen, M. V., Mariño, G., Pultz, D., Morselli, E., Færgeman, N. J., Kroemer, G. & Andersen, J. S., 2012, In : Cell Cycle. 11, 9, p. 1827-40 14 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Acetylesterase
Acetylation
Neurodegenerative Diseases
Pharmaceutical Preparations
Proteins

PhosphoSiteAnalyzer: A Bioinformatic Platform for Deciphering Phospho Proteomes Using Kinase Predictions Retrieved from NetworKIN

Bennetzen, M. V., Cox, J., Mann, M. & Andersen, J. S., 2012, In : Journal of Proteome Research. 11, 6, p. 3480-3486

Research output: Contribution to journalJournal articleResearchpeer-review

Proteome
Bioinformatics
Computational Biology
Phosphotransferases
Phosphopeptides

Temporal Profiling and Pulsed SILAC Labeling Identify Novel Secreted Proteins during ex vivo Osteoblast Differentiation of Human Stromal Stem Cells

Kristensen, L. P., Chen, L., Nielsen, M. O., Qanie, D. W., Kratchmarova, I., Kassem, M. & Andersen, J. S., 2012, In : Molecular and Cellular Proteomics. 11, 10, p. 989-1007 19 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Osteoblasts
Stromal Cells
Stem cells
Labeling
Proteins
2011

Comparative proteomics and activity of a green sulfur bacterium across the water column of Lake Cadagno, Switzerland.

Habicht, K. S., Miller, M., Cox, R. P., Frigaard, N-U., Tonolla, M., Peduzzi, S., Falkenby, L. G. & Andersen, J. S., 2011, In : Environmental Microbiology. 13, 1, p. 203-215

Research output: Contribution to journalJournal articleResearchpeer-review

Decellularized matrix from tumorigenic human mesenchymal stem cells promotes neovascularization with galectin-1 dependent endothelial interaction

Burns, J. S., Kristiansen, M., Kristensen, L. P., Larsen, K. H., Nielsen, M. O., Christiansen, H., Nehlin, J., Andersen, J. S. & Kassem, M., 1. Jan 2011, In : P L o S One. 6, 7, p. e21888

Research output: Contribution to journalJournal articleResearchpeer-review

Galectin 1
angiogenesis
Stem cells
Mesenchymal Stromal Cells
stem cells

ErbB2-associated changes in the lysosomal proteome

Nylandsted, J., Becker, A. C., Bunkenborg, J., Andersen, J. S., Dengjel, J. & Jäättelä, M., 1. Jul 2011, In : Proteomics. 11, 14, p. 2830-8 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Proteome
Purification
Apoferritins
Vacuolar Proton-Translocating ATPases
Membranes

Interaction profiling identifies the human nuclear exosome targeting complex

Lubas, M. S., Christensen, M. S., Kristiansen, M. S., Domanski, M., Falkenby, L. G., Lykke-Andersen, S., Andersen, J. S., Dziembowski, A. & Jensen, T. H., 19. Aug 2011, In : Molecular Cell. 43, 4, p. 624-37 14 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Exosomes
Polyadenylation
Proteins

Longevity-relevant regulation of autophagy at the level of the acetylproteome

Mariño, G., Morselli, E., Bennetzen, M. V., Eisenberg, T., Megalou, E., Schroeder, S., Cabrera, S., Bénit, P., Rustin, P., Criollo, A., Kepp, O., Galluzzi, L., Shen, S., Malik, S. A., Maiuri, M. C., Horio, Y., López-Otín, C., Andersen, J. S., Tavernarakis, N., Madeo, F. & 1 others, Kroemer, G., 1. Jun 2011, In : Autophagy. 7, 6, p. 647-9 3 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Acetylation
Sirtuin 1
Caenorhabditis elegans
Proteins
Life Expectancy

Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods

Jakobsen, L., Vanselow, K., Skogs, M., Toyoda, Y., Lundberg, E., Poser, I., Falkenby, L. G., Bennetzen, M., Westendorf, J., Nigg, E. A., Uhlen, M., Hyman, A. A. & Andersen, J. S., 20. Apr 2011, In : E M B O Journal. 30, 8, p. 1520-35 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Centrioles
Proteins
Genes
Cell Polarity
Cilia

Quantitative proteomics identifies ferritin in the innate immune response of C. elegans

Simonsen, K. T., Møller-Jensen, J., Kristensen, A. R., Andersen, J. S., Riddle, D. L. & Kallipolitis, B. H., 2011, In : Virulence . 2, 2, p. 120-130

Research output: Contribution to journalJournal articleResearchpeer-review

Quantitative proteomics of Chlorobaculum tepidum: Insights into the sulfur metabolism of a phototrophic green sulfur bacterium.

Falkenby, L. G., Szymanska, M., Holkenbrink, C., Habicht, K. S., Andersen, J. S., Miller, M. & Frigaard, N-U., 2011, In : F E M S Microbiology Letters. 323, p. 142-150

Research output: Contribution to journalJournal articleResearchpeer-review

Spermidine and resveratrol induce autophagy by distinct pathways converging on the acetylproteome

Morselli, E., Mariño, G., Bennetzen, M. V., Eisenberg, T., Megalou, E., Schroeder, S., Cabrera, S., Bénit, P., Rustin, P., Criollo, A., Kepp, O., Galluzzi, L., Shen, S., Malik, S. A., Maiuri, M. C., Horio, Y., López-Otín, C., Andersen, J. S., Tavernarakis, N., Madeo, F. & 1 others, Kroemer, G., 21. Feb 2011, In : Journal of Cell Biology. 192, 4, p. 615-29 15 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Sirtuin 1
Acetylesterase
Acetylation
NAD
Cytosol
2010

MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics

Mortensen, P., Gouw, J. W., Olsen, J. V., Ong, S-E., Rigbolt, K. T. G., Bunkenborg, J., Cox, J., Foster, L. J., Heck, A. J. R., Blagoev, B., Andersen, J. S. & Mann, M., 2010, In : Journal of Proteome Research. 9, 1, p. 393-403

Research output: Contribution to journalJournal articleResearchpeer-review

Mass spectrometry
Labels
Peptides
Ions
Phosphorylation

Organelle proteomics by label-free and SILAC-based protein correlation profiling

Dengjel, J., Jakobsen, L. & Andersen, J. S., 1. Jan 2010, In : Methods in Molecular Biology. 658, p. 255-65 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Proteins
Density Gradient Centrifugation
Equipment and Supplies

Site-specific Phosphorylation Dynamics of the Nuclear Proteome during the DNA Damage Response

Bennetzen, M., Larsen, D. H., Bunkenborg, J., Bartek, J., Lukas, J. & Andersen, J. S., 2010, In : Molecular and Cellular Proteomics. 9, 6, p. 1314-1323

Research output: Contribution to journalJournal articleResearchpeer-review

The chromatin-remodeling factor CHD4 coordinates signaling and repair after DNA damage

Larsen, D. H., Poinsignon, C., Gudjonsson, T., Dinant, C., Payne, M., Hari, F. J., Danielsen, J. M. R., Menard, P., Sand, J. C., Stucki, M., Lukas, C., Bartek, J., Andersen, J. S. & Lukas, J., 6. Sep 2010, In : Journal of Cell Biology. 190, 5, p. 731-40 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Chromatin Assembly and Disassembly
DNA-Binding Proteins
Cell Cycle
Double-Stranded DNA Breaks
Ligases

The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L

Tomecki, R., Kristiansen, M. S., Lykke-Andersen, S., Chlebowski, A., Larsen, K. M., Szczesny, R. J., Drazkowska, K., Pastula, A., Andersen, J. S., Stepien, P. P., Dziembowski, A. & Jensen, T. H., 21. Jul 2010, In : E M B O Journal. 29, 14, p. 2342-57 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Exosomes
Exonucleases
Ribonucleases
Catalytic Domain
Ribonuclease III

The minotaur proteome: avoiding cross-species identifications deriving from bovine serum in cell culture models

Bunkenborg, J., García, G. E., Paz, M. I. P., Andersen, J. S. & Molina, H., 1. Aug 2010, In : Proteomics. 10, 16, p. 3040-4 5 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Proteome
Cell culture
Identification (control systems)
Peptides
Serum
2009

Depletion of kinesin 5B affects lysosomal distribution and stability and induces peri-nuclear accumulation of autophagosomes in cancer cells

Cardoso, C. M. P., Groth-Pedersen, L., Høyer-Hansen, M., Kirkegaard, T., Corcelle, E., Andersen, J. S., Jäättelä, M. & Nylandsted, J., 1. Jan 2009, In : PLoS ONE. 4, 2, p. e4424

Research output: Contribution to journalJournal articleResearchpeer-review

Kinesin
kinesin
MCF-7 Cells
Cells
Neoplasms

FACT facilitates chromatin transcription by RNA polymerases I and III

Birch, J. L., Tan, B. C-M., Panov, K. I., Panova, T. B., Andersen, J. S., Owen-Hughes, T. A., Russell, J., Lee, S-C. & Zomerdijk, J. C. B. M., 8. Apr 2009, In : EMBO Journal. 28, 7, p. 854-865 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

RNA Polymerase I
RNA Polymerase III
Transcription
Chromatin
Genes