Daniel Merkle

Ph.D.

Professor, Department of Mathematics and Computer Science (IMADA)
Professor, Computer Science

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49 Journal article
31 Article in proceedings
6 Conference article
5 Book chapter
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A Generic Framework for Engineering Graph Canonization Algorithms
Andersen, J. L. & Merkle, D., Apr 2020, In: A C M Journal of Experimental Algorithmics. 25, 1, 1.2.
Research output: Contribution to journal › Journal article › Research › peer-review
A graph-based tool to embed the π-calculus into a computational DPO framework
Andersen, J. L., Hellmuth, M., Merkle, D., Nøjgaard, N. & Peressotti, M., 8. Mar 2020, In: CEUR Workshop Proceedings. 2568, p. 121-132
Research output: Contribution to journal › Conference article › Research › peer-review

Open Access
File
4 Downloads (Pure)
Atom Tracking Using Cayley Graphs
Hellmuth, M., Merkle, D. & Nøjgaard, N., 2020, Proceedings of Bioinformatics Research and Applications: 16th International Symposium, ISBRA 2020. Cai, Z., Mandoiu, I., Narasimhan, G., Skums, P. & Guo, X. (eds.). Springer Nature, p. 406-415 (Lecture Notes in Computer Science; No. 12304).
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Combining Graph Transformations and Semigroups for Isotopic Labeling Design
Andersen, J. L., Merkle, D. & Rasmussen, P. S., Feb 2020, In: Journal of Computational Biology. 27, 2, p. 269-287 19 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Defining Autocatalysis in Chemical Reaction Networks
Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2020, In: Journal of Systems Chemistry. 8, p. 121-133
Research output: Contribution to journal › Journal article › Research › peer-review

28 Peer review of manuscripts
3 Conference organisation or participation
2 Membership of commitees, commissions, boards, councils, associations, organisations, or similar
2 Board duties in companies, associations, or public organisations
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- 2 Talks and presentations in private or public companies
- 1 Membership of research networks or expert groups

Teaching Committee, IMADA (External organisation)
Daniel Merkle (Member)
2015 → …
Activity: Membership › Membership of commitees, commissions, boards, councils, associations, organisations, or similar
University of Southern Denmark (External organisation)
Daniel Merkle (Member)
2015 → …
Activity: Membership › Membership of commitees, commissions, boards, councils, associations, organisations, or similar
Dagstuhl Seminar - Algorithmic Cheminformatics
Daniel Merkle (Organizer)
2. Nov 2014 → 7. Nov 2014
Activity: Attending an event › Conference organisation or participation
COST Action CM1304 "Emergence and Evolution of Complex Chemical Systems" (External organisation)
Daniel Merkle (Member)
3. Dec 2013 → 2. Dec 2017
Activity: Membership › Board duties in companies, associations, or public organisations
TD COST Action TD1308 Origins and evolution of life on Earth and in the Universe (ORIGINS) (External organisation)
Daniel Merkle (Member)
2013 → 2017
Activity: Membership › Board duties in companies, associations, or public organisations

1 Finished
1 Active

Novo Nordisk Fonden - From Category Theory to Enzyme Design: Unleashing the Potential of Computational Systems Chemistry
Merkle, D.
01/07/2020 → 30/06/2022
Project: Private Foundations
EUOpstart - Training Alliance for Computational Systems Chemistry
Merkle, D.
20/05/2019 → 09/01/2020
Project: Research

Unravelling the origins of life with mathematical chemistry
Daniel Merkle
01/09/2013
1 Media contribution
Press/Media: Press / Media