Tools for the Validation of Genomes and Transcriptomes with Proteomics data

Chi Nam Ignatius Pang, Carlos Aya, Aidan Tay, Nandan P Deshpande, Nadeem O Kaakoush, Hazel Mitchell, Natalie A Twine, Moustapha Kassem, Marc R Wilkins

Publikation: Konferencebidrag uden forlag/tidsskriftPosterForskningpeer review


Aims With the large amount of genomics and proteomics data currently available, there remains a lack of tools to integrate data from these two fields. This project aims to provide a ‘nexus’ for integrating genomics and transcriptomics data generated from next-generation sequencing with proteomics data generated from protein mass spectrometry. We are developing a set of tools which allow users to:
•Co-visualise genomics, transcriptomics, and proteomics data using the Integrated Genomics Viewer (IGV).1
•Validate the existence of genes and mRNAs using peptides identified from mass spectrometry experiments.
•Validate alternatively spliced mRNA isoforms by searching for peptides that span across exon-exon junctions.
Publikationsdato7. feb. 2013
Antal sider1
StatusUdgivet - 7. feb. 2013
BegivenhedAustralian Proteomics Society: 18th Annual meeting - Mantra Lorne, Australien
Varighed: 7. feb. 201310. feb. 2013


KonferenceAustralian Proteomics Society
ByMantra Lorne


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