Single-cell tagged reverse transcription (STRT-Seq)

Kedar Nath Natarajan*

*Kontaktforfatter for dette arbejde

Publikation: Kapitel i bog/rapport/konference-proceedingKapitel i bogForskningpeer review

Abstrakt

Single-cell RNA sequencing (scRNA-seq) has become an established approach to profile entire transcriptomes of individual cells from different cell types, tissues, species, and organisms. Single-cell tagged reverse transcription sequencing (STRT-seq) is one of the early single-cell methods which utilize 5′ tag counting of transcripts. STRT-seq performed on microfluidics Fluidigm C1 platform (STRT-C1) is a flexible scRNA-seq approach that allows for accurate, sensitive and importantly molecular counting of transcripts at single-cell level. Herein, I describe the STRT-C1 method and the steps involved in capturing 96 cells across C1 microfluidics chip, cDNA synthesis, and preparing single-cell libraries for Illumina short-read sequencing.

OriginalsprogEngelsk
TitelSingle Cell Methods : Sequencing and Proteomics
RedaktørerValentino Proserpio
ForlagHumana Press
Publikationsdato27. apr. 2019
Sider133-153
Kapitel9
ISBN (Trykt)978-1-4939-9239-3
ISBN (Elektronisk)978-1-4939-9240-9
DOI
StatusUdgivet - 27. apr. 2019
NavnMethods in Molecular Biology
Vol/bind1979
ISSN1064-3745

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