Evolution of genes and genomes on the Drosophila phylogeny

Andrew G Clark, Michael B Eisen, Douglas R Smith, Casey M Bergman, Brian Oliver, Therese A Markow, Thomas C Kaufman, Manolis Kellis, William Gelbart, Venky N Iyer, Daniel A Pollard, Timothy B Sackton, Amanda M Larracuente, Nadia D Singh, Jose P Abad, Dawn N Abt, Boris Adryan, Montserrat Aguade, Hiroshi Akashi, Wyatt W Anderson & 397 andre Charles F Aquadro, David H Ardell, Roman Arguello, Carlo G Artieri, Daniel A Barbash, Daniel Barker, Paolo Barsanti, Phil Batterham, Serafim Batzoglou, Dave Begun, Arjun Bhutkar, Enrico Blanco, Stephanie A Bosak, Robert K Bradley, Adrianne D Brand, Michael R Brent, Angela N Brooks, Randall H Brown, Roger K Butlin, Corrado Caggese, Brian R Calvi, A Bernardo de Carvalho, Anat Caspi, Sergio Castrezana, Susan E Celniker, Jean L Chang, Charles Chapple, Sourav Chatterji, Asif Chinwalla, Alberto Civetta, Sandra W Clifton, Josep M Comeron, James C Costello, Jerry A Coyne, Jennifer Daub, Robert G David, Arthur L Delcher, Kim Delehaunty, Chuong B Do, Heather Ebling, Kevin Edwards, Thomas Eickbush, Jay D Evans, Alan Filipski, Sven Findeiss, Eva Freyhult, Lucinda Fulton, Robert Fulton, Ana C L Garcia, Anastasia Gardiner, David A Garfield, Barry E Garvin, Greg Gibson, Don Gilbert, Sante Gnerre, Jennifer Godfrey, Robert Good, Valer Gotea, Brenton Gravely, Anthony J Greenberg, Sam Griffiths-Jones, Samuel Gross, Roderic Guigo, Erik A Gustafson, Wilfried Haerty, Matthew W Hahn, Daniel L Halligan, Aaron L Halpern, Gillian M Halter, Mira V Han, Andreas Heger, LaDeana Hillier, Angie S Hinrichs, Ian Holmes, Roger A Hoskins, Melissa J Hubisz, Dan Hultmark, Melanie A Huntley, David B Jaffe, Santosh Jagadeeshan, William R Jeck, Justin Johnson, Corbin D Jones, William C Jordan, Gary H Karpen, Eiko Kataoka, Peter D Keightley, Pouya Kheradpour, Ewen F Kirkness, Leonardo B Koerich, Karsten Kristiansen, Dave Kudrna, Rob J Kulathinal, Sudhir Kumar, Roberta Kwok, Eric Lander, Charles H Langley, Richard Lapoint, Brian P Lazzaro, So-Jeong Lee, Lisa Levesque, Ruiqiang Li, Chiao-Feng Lin, Michael F Lin, Kerstin Lindblad-Toh, Ana Llopart, Manyuan Long, Lloyd Low, Elena Lozovsky, Jian Lu, Meizhong Luo, Carlos A Machado, Wojciech Makalowski, Mar Marzo, Muneo Matsuda, Luciano Matzkin, Bryant McAllister, Carolyn S McBride, Brendan McKernan, Kevin McKernan, Maria Mendez-Lago, Patrick Minx, Michael U Mollenhauer, Kristi Montooth, Stephen M Mount, Xu Mu, Eugene Myers, Barbara Negre, Stuart Newfeld, Rasmus Nielsen, Mohamed A F Noor, Patrick O'Grady, Lior Pachter, Montserrat Papaceit, Matthew J Parisi, Michael Parisi, Leopold Parts, Jakob S Pedersen, Graziano Pesole, Adam M Phillippy, Chris P Ponting, Mihai Pop, Damiano Porcelli, Jeffrey R Powell, Sonja Prohaska, Kim Pruitt, Marta Puig, Hadi Quesneville, Kristipati Ravi Ram, David Rand, Matthew D Rasmussen, Laura K Reed, Robert Reenan, Amy Reily, Karin A Remington, Tania T Rieger, Michael G Ritchie, Charles Robin, Yu-Hui Rogers, Claudia Rohde, Julio Rozas, Marc J Rubenfield, Alfredo Ruiz, Susan Russo, Steven L Salzberg, Alejandro Sanchez-Gracia, David J Saranga, Hajime Sato, Stephen W Schaeffer, Michael C Schatz, Todd Schlenke, Russell Schwartz, Carmen Segarra, Rama S Singh, Laura Sirot, Marina Sirota, Nicholas B Sisneros, Chris D Smith, Temple F Smith, John Spieth, Deborah E Stage, Alexander Stark, Wolfgang Stephan, Robert L Strausberg, Sebastian Strempel, David Sturgill, Granger Sutton, Granger G Sutton, Wei Tao, Sarah Teichmann, Yoshiko N Tobari, Yoshihiko Tomimura, Jason M Tsolas, Vera L S Valente, Eli Venter, J Craig Venter, Saverio Vicario, Filipe G Vieira, Albert J Vilella, Alfredo Villasante, Brian Walenz, Jun Wang, Marvin Wasserman, Thomas Watts, Derek Wilson, Richard K Wilson, Rod A Wing, Mariana F Wolfner, Alex Wong, Gane Ka-Shu Wong, Chung-I Wu, Gabriel Wu, Daisuke Yamamoto, Hsiao-Pei Yang, Shiaw-Pyng Yang, James A Yorke, Kiyohito Yoshida, Evgeny Zdobnov, Peili Zhang, Yu Zhang, Aleksey V Zimin, Jennifer Baldwin, Amr Abdouelleil, Jamal Abdulkadir, Adal Abebe, Brikti Abera, Justin Abreu, St Christophe Acer, Lynne Aftuck, Allen Alexander, Peter An, Erica Anderson, Scott Anderson, Harindra Arachi, Marc Azer, Pasang Bachantsang, Andrew Barry, Tashi Bayul, Aaron Berlin, Daniel Bessette, Toby Bloom, Jason Blye, Leonid Boguslavskiy, Claude Bonnet, Boris Boukhgalter, Imane Bourzgui, Adam Brown, Patrick Cahill, Sheridon Channer, Yama Cheshatsang, Lisa Chuda, Mieke Citroen, Alville Collymore, Patrick Cooke, Maura Costello, Katie D'Aco, Riza Daza, Georgius De Haan, Stuart DeGray, Christina DeMaso, Norbu Dhargay, Kimberly Dooley, Erin Dooley, Missole Doricent, Passang Dorje, Kunsang Dorjee, Alan Dupes, Richard Elong, Jill Falk, Abderrahim Farina, Susan Faro, Diallo Ferguson, Sheila Fisher, Chelsea D Foley, Alicia Franke, Dennis Friedrich, Loryn Gadbois, Gary Gearin, Christina R Gearin, Georgia Giannoukos, Tina Goode, Joseph Graham, Edward Grandbois, Sharleen Grewal, Kunsang Gyaltsen, Nabil Hafez, Birhane Hagos, Jennifer Hall, Charlotte Henson, Andrew Hollinger, Tracey Honan, Monika D Huard, Leanne Hughes, Brian Hurhula, M Erii Husby, Asha Kamat, Ben Kanga, Seva Kashin, Dmitry Khazanovich, Peter Kisner, Krista Lance, Marcia Lara, William Lee, Niall Lennon, Frances Letendre, Rosie LeVine, Alex Lipovsky, Xiaohong Liu, Jinlei Liu, Shangtao Liu, Tashi Lokyitsang, Yeshi Lokyitsang, Rakela Lubonja, Annie Lui, Pen MacDonald, Vasilia Magnisalis, Kebede Maru, Charles Matthews, William McCusker, Susan McDonough, Teena Mehta, James Meldrim, Louis Meneus, Oana Mihai, Atanas Mihalev, Tanya Mihova, Rachel Mittelman, Valentine Mlenga, Anna Montmayeur, Leonidas Mulrain, Adam Navidi, Jerome Naylor, Tamrat Negash, Thu Nguyen, Nga Nguyen, Robert Nicol, Choe Norbu, Nyima Norbu, Nathaniel Novod, Barry O'Neill, Sahal Osman, Eva Markiewicz, Otero L Oyono, Christopher Patti, Pema Phunkhang, Fritz Pierre, Margaret Priest, Sujaa Raghuraman, Filip Rege, Rebecca Reyes, Cecil Rise, Peter Rogov, Keenan Ross, Elizabeth Ryan, Sampath Settipalli, Terry Shea, Ngawang Sherpa, Lu Shi, Diana Shih, Todd Sparrow, Jessica Spaulding, John Stalker, Nicole Stange-Thomann, Sharon Stavropoulos, Catherine Stone, Christopher Strader, Senait Tesfaye, Talene Thomson, Yama Thoulutsang, Dawa Thoulutsang, Kerri Topham, Ira Topping, Tsamla Tsamla, Helen Vassiliev, Andy Vo, Tsering Wangchuk, Tsering Wangdi, Michael Weiand, Jane Wilkinson, Adam Wilson, Shailendra Yadav, Geneva Young, Qing Yu, Lisa Zembek, Danni Zhong, Andrew Zimmer, Zac Zwirko, David B Jaffe, Pablo Alvarez, Will Brockman, Jonathan Butler, CheeWhye Chin, Sante Gnerre, Manfred Grabherr, Michael Kleber, Evan Mauceli, Iain MacCallum

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Resumé

Udgivelsesdato: 2007-Nov-8
OriginalsprogEngelsk
TidsskriftNature
Vol/bind450
Udgave nummer7167
Sider (fra-til)203-218
Antal sider15
ISSN0028-0836
DOI
StatusUdgivet - 8 nov. 2007

Fingeraftryk

Phylogeny
Untranslated RNA
Neurobiology
Nucleic Acid Regulatory Sequences
Genetic Models
Ecology
Drosophila melanogaster
Cell Biology
Research
Proteins

Emneord

    Citer dette

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., ... MacCallum, I. (2007). Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450(7167), 203-218. https://doi.org/10.1038/nature06341
    Clark, Andrew G ; Eisen, Michael B ; Smith, Douglas R ; Bergman, Casey M ; Oliver, Brian ; Markow, Therese A ; Kaufman, Thomas C ; Kellis, Manolis ; Gelbart, William ; Iyer, Venky N ; Pollard, Daniel A ; Sackton, Timothy B ; Larracuente, Amanda M ; Singh, Nadia D ; Abad, Jose P ; Abt, Dawn N ; Adryan, Boris ; Aguade, Montserrat ; Akashi, Hiroshi ; Anderson, Wyatt W ; Aquadro, Charles F ; Ardell, David H ; Arguello, Roman ; Artieri, Carlo G ; Barbash, Daniel A ; Barker, Daniel ; Barsanti, Paolo ; Batterham, Phil ; Batzoglou, Serafim ; Begun, Dave ; Bhutkar, Arjun ; Blanco, Enrico ; Bosak, Stephanie A ; Bradley, Robert K ; Brand, Adrianne D ; Brent, Michael R ; Brooks, Angela N ; Brown, Randall H ; Butlin, Roger K ; Caggese, Corrado ; Calvi, Brian R ; Bernardo de Carvalho, A ; Caspi, Anat ; Castrezana, Sergio ; Celniker, Susan E ; Chang, Jean L ; Chapple, Charles ; Chatterji, Sourav ; Chinwalla, Asif ; Civetta, Alberto ; Clifton, Sandra W ; Comeron, Josep M ; Costello, James C ; Coyne, Jerry A ; Daub, Jennifer ; David, Robert G ; Delcher, Arthur L ; Delehaunty, Kim ; Do, Chuong B ; Ebling, Heather ; Edwards, Kevin ; Eickbush, Thomas ; Evans, Jay D ; Filipski, Alan ; Findeiss, Sven ; Freyhult, Eva ; Fulton, Lucinda ; Fulton, Robert ; Garcia, Ana C L ; Gardiner, Anastasia ; Garfield, David A ; Garvin, Barry E ; Gibson, Greg ; Gilbert, Don ; Gnerre, Sante ; Godfrey, Jennifer ; Good, Robert ; Gotea, Valer ; Gravely, Brenton ; Greenberg, Anthony J ; Griffiths-Jones, Sam ; Gross, Samuel ; Guigo, Roderic ; Gustafson, Erik A ; Haerty, Wilfried ; Hahn, Matthew W ; Halligan, Daniel L ; Halpern, Aaron L ; Halter, Gillian M ; Han, Mira V ; Heger, Andreas ; Hillier, LaDeana ; Hinrichs, Angie S ; Holmes, Ian ; Hoskins, Roger A ; Hubisz, Melissa J ; Hultmark, Dan ; Huntley, Melanie A ; Jaffe, David B ; Jagadeeshan, Santosh ; Jeck, William R ; Johnson, Justin ; Jones, Corbin D ; Jordan, William C ; Karpen, Gary H ; Kataoka, Eiko ; Keightley, Peter D ; Kheradpour, Pouya ; Kirkness, Ewen F ; Koerich, Leonardo B ; Kristiansen, Karsten ; Kudrna, Dave ; Kulathinal, Rob J ; Kumar, Sudhir ; Kwok, Roberta ; Lander, Eric ; Langley, Charles H ; Lapoint, Richard ; Lazzaro, Brian P ; Lee, So-Jeong ; Levesque, Lisa ; Li, Ruiqiang ; Lin, Chiao-Feng ; Lin, Michael F ; Lindblad-Toh, Kerstin ; Llopart, Ana ; Long, Manyuan ; Low, Lloyd ; Lozovsky, Elena ; Lu, Jian ; Luo, Meizhong ; Machado, Carlos A ; Makalowski, Wojciech ; Marzo, Mar ; Matsuda, Muneo ; Matzkin, Luciano ; McAllister, Bryant ; McBride, Carolyn S ; McKernan, Brendan ; McKernan, Kevin ; Mendez-Lago, Maria ; Minx, Patrick ; Mollenhauer, Michael U ; Montooth, Kristi ; Mount, Stephen M ; Mu, Xu ; Myers, Eugene ; Negre, Barbara ; Newfeld, Stuart ; Nielsen, Rasmus ; Noor, Mohamed A F ; O'Grady, Patrick ; Pachter, Lior ; Papaceit, Montserrat ; Parisi, Matthew J ; Parisi, Michael ; Parts, Leopold ; Pedersen, Jakob S ; Pesole, Graziano ; Phillippy, Adam M ; Ponting, Chris P ; Pop, Mihai ; Porcelli, Damiano ; Powell, Jeffrey R ; Prohaska, Sonja ; Pruitt, Kim ; Puig, Marta ; Quesneville, Hadi ; Ram, Kristipati Ravi ; Rand, David ; Rasmussen, Matthew D ; Reed, Laura K ; Reenan, Robert ; Reily, Amy ; Remington, Karin A ; Rieger, Tania T ; Ritchie, Michael G ; Robin, Charles ; Rogers, Yu-Hui ; Rohde, Claudia ; Rozas, Julio ; Rubenfield, Marc J ; Ruiz, Alfredo ; Russo, Susan ; Salzberg, Steven L ; Sanchez-Gracia, Alejandro ; Saranga, David J ; Sato, Hajime ; Schaeffer, Stephen W ; Schatz, Michael C ; Schlenke, Todd ; Schwartz, Russell ; Segarra, Carmen ; Singh, Rama S ; Sirot, Laura ; Sirota, Marina ; Sisneros, Nicholas B ; Smith, Chris D ; Smith, Temple F ; Spieth, John ; Stage, Deborah E ; Stark, Alexander ; Stephan, Wolfgang ; Strausberg, Robert L ; Strempel, Sebastian ; Sturgill, David ; Sutton, Granger ; Sutton, Granger G ; Tao, Wei ; Teichmann, Sarah ; Tobari, Yoshiko N ; Tomimura, Yoshihiko ; Tsolas, Jason M ; Valente, Vera L S ; Venter, Eli ; Venter, J Craig ; Vicario, Saverio ; Vieira, Filipe G ; Vilella, Albert J ; Villasante, Alfredo ; Walenz, Brian ; Wang, Jun ; Wasserman, Marvin ; Watts, Thomas ; Wilson, Derek ; Wilson, Richard K ; Wing, Rod A ; Wolfner, Mariana F ; Wong, Alex ; Wong, Gane Ka-Shu ; Wu, Chung-I ; Wu, Gabriel ; Yamamoto, Daisuke ; Yang, Hsiao-Pei ; Yang, Shiaw-Pyng ; Yorke, James A ; Yoshida, Kiyohito ; Zdobnov, Evgeny ; Zhang, Peili ; Zhang, Yu ; Zimin, Aleksey V ; Baldwin, Jennifer ; Abdouelleil, Amr ; Abdulkadir, Jamal ; Abebe, Adal ; Abera, Brikti ; Abreu, Justin ; Acer, St Christophe ; Aftuck, Lynne ; Alexander, Allen ; An, Peter ; Anderson, Erica ; Anderson, Scott ; Arachi, Harindra ; Azer, Marc ; Bachantsang, Pasang ; Barry, Andrew ; Bayul, Tashi ; Berlin, Aaron ; Bessette, Daniel ; Bloom, Toby ; Blye, Jason ; Boguslavskiy, Leonid ; Bonnet, Claude ; Boukhgalter, Boris ; Bourzgui, Imane ; Brown, Adam ; Cahill, Patrick ; Channer, Sheridon ; Cheshatsang, Yama ; Chuda, Lisa ; Citroen, Mieke ; Collymore, Alville ; Cooke, Patrick ; Costello, Maura ; D'Aco, Katie ; Daza, Riza ; De Haan, Georgius ; DeGray, Stuart ; DeMaso, Christina ; Dhargay, Norbu ; Dooley, Kimberly ; Dooley, Erin ; Doricent, Missole ; Dorje, Passang ; Dorjee, Kunsang ; Dupes, Alan ; Elong, Richard ; Falk, Jill ; Farina, Abderrahim ; Faro, Susan ; Ferguson, Diallo ; Fisher, Sheila ; Foley, Chelsea D ; Franke, Alicia ; Friedrich, Dennis ; Gadbois, Loryn ; Gearin, Gary ; Gearin, Christina R ; Giannoukos, Georgia ; Goode, Tina ; Graham, Joseph ; Grandbois, Edward ; Grewal, Sharleen ; Gyaltsen, Kunsang ; Hafez, Nabil ; Hagos, Birhane ; Hall, Jennifer ; Henson, Charlotte ; Hollinger, Andrew ; Honan, Tracey ; Huard, Monika D ; Hughes, Leanne ; Hurhula, Brian ; Husby, M Erii ; Kamat, Asha ; Kanga, Ben ; Kashin, Seva ; Khazanovich, Dmitry ; Kisner, Peter ; Lance, Krista ; Lara, Marcia ; Lee, William ; Lennon, Niall ; Letendre, Frances ; LeVine, Rosie ; Lipovsky, Alex ; Liu, Xiaohong ; Liu, Jinlei ; Liu, Shangtao ; Lokyitsang, Tashi ; Lokyitsang, Yeshi ; Lubonja, Rakela ; Lui, Annie ; MacDonald, Pen ; Magnisalis, Vasilia ; Maru, Kebede ; Matthews, Charles ; McCusker, William ; McDonough, Susan ; Mehta, Teena ; Meldrim, James ; Meneus, Louis ; Mihai, Oana ; Mihalev, Atanas ; Mihova, Tanya ; Mittelman, Rachel ; Mlenga, Valentine ; Montmayeur, Anna ; Mulrain, Leonidas ; Navidi, Adam ; Naylor, Jerome ; Negash, Tamrat ; Nguyen, Thu ; Nguyen, Nga ; Nicol, Robert ; Norbu, Choe ; Norbu, Nyima ; Novod, Nathaniel ; O'Neill, Barry ; Osman, Sahal ; Markiewicz, Eva ; Oyono, Otero L ; Patti, Christopher ; Phunkhang, Pema ; Pierre, Fritz ; Priest, Margaret ; Raghuraman, Sujaa ; Rege, Filip ; Reyes, Rebecca ; Rise, Cecil ; Rogov, Peter ; Ross, Keenan ; Ryan, Elizabeth ; Settipalli, Sampath ; Shea, Terry ; Sherpa, Ngawang ; Shi, Lu ; Shih, Diana ; Sparrow, Todd ; Spaulding, Jessica ; Stalker, John ; Stange-Thomann, Nicole ; Stavropoulos, Sharon ; Stone, Catherine ; Strader, Christopher ; Tesfaye, Senait ; Thomson, Talene ; Thoulutsang, Yama ; Thoulutsang, Dawa ; Topham, Kerri ; Topping, Ira ; Tsamla, Tsamla ; Vassiliev, Helen ; Vo, Andy ; Wangchuk, Tsering ; Wangdi, Tsering ; Weiand, Michael ; Wilkinson, Jane ; Wilson, Adam ; Yadav, Shailendra ; Young, Geneva ; Yu, Qing ; Zembek, Lisa ; Zhong, Danni ; Zimmer, Andrew ; Zwirko, Zac ; Jaffe, David B ; Alvarez, Pablo ; Brockman, Will ; Butler, Jonathan ; Chin, CheeWhye ; Gnerre, Sante ; Grabherr, Manfred ; Kleber, Michael ; Mauceli, Evan ; MacCallum, Iain. / Evolution of genes and genomes on the Drosophila phylogeny. I: Nature. 2007 ; Bind 450, Nr. 7167. s. 203-218.
    @article{99bb51a0fc4711dc86ef000ea68e967b,
    title = "Evolution of genes and genomes on the Drosophila phylogeny",
    abstract = "Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.",
    keywords = "Animals, Codon, DNA Transposable Elements, Drosophila, Drosophila Proteins, Evolution, Molecular, Gene Order, Genes, Insect, Genome, Insect, Genome, Mitochondrial, Genomics, Immunity, Multigene Family, Phylogeny, RNA, Untranslated, Reproduction, Sequence Alignment, Sequence Analysis, DNA, Synteny",
    author = "Clark, {Andrew G} and Eisen, {Michael B} and Smith, {Douglas R} and Bergman, {Casey M} and Brian Oliver and Markow, {Therese A} and Kaufman, {Thomas C} and Manolis Kellis and William Gelbart and Iyer, {Venky N} and Pollard, {Daniel A} and Sackton, {Timothy B} and Larracuente, {Amanda M} and Singh, {Nadia D} and Abad, {Jose P} and Abt, {Dawn N} and Boris Adryan and Montserrat Aguade and Hiroshi Akashi and Anderson, {Wyatt W} and Aquadro, {Charles F} and Ardell, {David H} and Roman Arguello and Artieri, {Carlo G} and Barbash, {Daniel A} and Daniel Barker and Paolo Barsanti and Phil Batterham and Serafim Batzoglou and Dave Begun and Arjun Bhutkar and Enrico Blanco and Bosak, {Stephanie A} and Bradley, {Robert K} and Brand, {Adrianne D} and Brent, {Michael R} and Brooks, {Angela N} and Brown, {Randall H} and Butlin, {Roger K} and Corrado Caggese and Calvi, {Brian R} and {Bernardo de Carvalho}, A and Anat Caspi and Sergio Castrezana and Celniker, {Susan E} and Chang, {Jean L} and Charles Chapple and Sourav Chatterji and Asif Chinwalla and Alberto Civetta and Clifton, {Sandra W} and Comeron, {Josep M} and Costello, {James C} and Coyne, {Jerry A} and Jennifer Daub and David, {Robert G} and Delcher, {Arthur L} and Kim Delehaunty and Do, {Chuong B} and Heather Ebling and Kevin Edwards and Thomas Eickbush and Evans, {Jay D} and Alan Filipski and Sven Findeiss and Eva Freyhult and Lucinda Fulton and Robert Fulton and Garcia, {Ana C L} and Anastasia Gardiner and Garfield, {David A} and Garvin, {Barry E} and Greg Gibson and Don Gilbert and Sante Gnerre and Jennifer Godfrey and Robert Good and Valer Gotea and Brenton Gravely and Greenberg, {Anthony J} and Sam Griffiths-Jones and Samuel Gross and Roderic Guigo and Gustafson, {Erik A} and Wilfried Haerty and Hahn, {Matthew W} and Halligan, {Daniel L} and Halpern, {Aaron L} and Halter, {Gillian M} and Han, {Mira V} and Andreas Heger and LaDeana Hillier and Hinrichs, {Angie S} and Ian Holmes and Hoskins, {Roger A} and Hubisz, {Melissa J} and Dan Hultmark and Huntley, {Melanie A} and Jaffe, {David B} and Santosh Jagadeeshan and Jeck, {William R} and Justin Johnson and Jones, {Corbin D} and Jordan, {William C} and Karpen, {Gary H} and Eiko Kataoka and Keightley, {Peter D} and Pouya Kheradpour and Kirkness, {Ewen F} and Koerich, {Leonardo B} and Karsten Kristiansen and Dave Kudrna and Kulathinal, {Rob J} and Sudhir Kumar and Roberta Kwok and Eric Lander and Langley, {Charles H} and Richard Lapoint and Lazzaro, {Brian P} and So-Jeong Lee and Lisa Levesque and Ruiqiang Li and Chiao-Feng Lin and Lin, {Michael F} and Kerstin Lindblad-Toh and Ana Llopart and Manyuan Long and Lloyd Low and Elena Lozovsky and Jian Lu and Meizhong Luo and Machado, {Carlos A} and Wojciech Makalowski and Mar Marzo and Muneo Matsuda and Luciano Matzkin and Bryant McAllister and McBride, {Carolyn S} and Brendan McKernan and Kevin McKernan and Maria Mendez-Lago and Patrick Minx and Mollenhauer, {Michael U} and Kristi Montooth and Mount, {Stephen M} and Xu Mu and Eugene Myers and Barbara Negre and Stuart Newfeld and Rasmus Nielsen and Noor, {Mohamed A F} and Patrick O'Grady and Lior Pachter and Montserrat Papaceit and Parisi, {Matthew J} and Michael Parisi and Leopold Parts and Pedersen, {Jakob S} and Graziano Pesole and Phillippy, {Adam M} and Ponting, {Chris P} and Mihai Pop and Damiano Porcelli and Powell, {Jeffrey R} and Sonja Prohaska and Kim Pruitt and Marta Puig and Hadi Quesneville and Ram, {Kristipati Ravi} and David Rand and Rasmussen, {Matthew D} and Reed, {Laura K} and Robert Reenan and Amy Reily and Remington, {Karin A} and Rieger, {Tania T} and Ritchie, {Michael G} and Charles Robin and Yu-Hui Rogers and Claudia Rohde and Julio Rozas and Rubenfield, {Marc J} and Alfredo Ruiz and Susan Russo and Salzberg, {Steven L} and Alejandro Sanchez-Gracia and Saranga, {David J} and Hajime Sato and Schaeffer, {Stephen W} and Schatz, {Michael C} and Todd Schlenke and Russell Schwartz and Carmen Segarra and Singh, {Rama S} and Laura Sirot and Marina Sirota and Sisneros, {Nicholas B} and Smith, {Chris D} and Smith, {Temple F} and John Spieth and Stage, {Deborah E} and Alexander Stark and Wolfgang Stephan and Strausberg, {Robert L} and Sebastian Strempel and David Sturgill and Granger Sutton and Sutton, {Granger G} and Wei Tao and Sarah Teichmann and Tobari, {Yoshiko N} and Yoshihiko Tomimura and Tsolas, {Jason M} and Valente, {Vera L S} and Eli Venter and Venter, {J Craig} and Saverio Vicario and Vieira, {Filipe G} and Vilella, {Albert J} and Alfredo Villasante and Brian Walenz and Jun Wang and Marvin Wasserman and Thomas Watts and Derek Wilson and Wilson, {Richard K} and Wing, {Rod A} and Wolfner, {Mariana F} and Alex Wong and Wong, {Gane Ka-Shu} and Chung-I Wu and Gabriel Wu and Daisuke Yamamoto and Hsiao-Pei Yang and Shiaw-Pyng Yang and Yorke, {James A} and Kiyohito Yoshida and Evgeny Zdobnov and Peili Zhang and Yu Zhang and Zimin, {Aleksey V} and Jennifer Baldwin and Amr Abdouelleil and Jamal Abdulkadir and Adal Abebe and Brikti Abera and Justin Abreu and Acer, {St Christophe} and Lynne Aftuck and Allen Alexander and Peter An and Erica Anderson and Scott Anderson and Harindra Arachi and Marc Azer and Pasang Bachantsang and Andrew Barry and Tashi Bayul and Aaron Berlin and Daniel Bessette and Toby Bloom and Jason Blye and Leonid Boguslavskiy and Claude Bonnet and Boris Boukhgalter and Imane Bourzgui and Adam Brown and Patrick Cahill and Sheridon Channer and Yama Cheshatsang and Lisa Chuda and Mieke Citroen and Alville Collymore and Patrick Cooke and Maura Costello and Katie D'Aco and Riza Daza and {De Haan}, Georgius and Stuart DeGray and Christina DeMaso and Norbu Dhargay and Kimberly Dooley and Erin Dooley and Missole Doricent and Passang Dorje and Kunsang Dorjee and Alan Dupes and Richard Elong and Jill Falk and Abderrahim Farina and Susan Faro and Diallo Ferguson and Sheila Fisher and Foley, {Chelsea D} and Alicia Franke and Dennis Friedrich and Loryn Gadbois and Gary Gearin and Gearin, {Christina R} and Georgia Giannoukos and Tina Goode and Joseph Graham and Edward Grandbois and Sharleen Grewal and Kunsang Gyaltsen and Nabil Hafez and Birhane Hagos and Jennifer Hall and Charlotte Henson and Andrew Hollinger and Tracey Honan and Huard, {Monika D} and Leanne Hughes and Brian Hurhula and Husby, {M Erii} and Asha Kamat and Ben Kanga and Seva Kashin and Dmitry Khazanovich and Peter Kisner and Krista Lance and Marcia Lara and William Lee and Niall Lennon and Frances Letendre and Rosie LeVine and Alex Lipovsky and Xiaohong Liu and Jinlei Liu and Shangtao Liu and Tashi Lokyitsang and Yeshi Lokyitsang and Rakela Lubonja and Annie Lui and Pen MacDonald and Vasilia Magnisalis and Kebede Maru and Charles Matthews and William McCusker and Susan McDonough and Teena Mehta and James Meldrim and Louis Meneus and Oana Mihai and Atanas Mihalev and Tanya Mihova and Rachel Mittelman and Valentine Mlenga and Anna Montmayeur and Leonidas Mulrain and Adam Navidi and Jerome Naylor and Tamrat Negash and Thu Nguyen and Nga Nguyen and Robert Nicol and Choe Norbu and Nyima Norbu and Nathaniel Novod and Barry O'Neill and Sahal Osman and Eva Markiewicz and Oyono, {Otero L} and Christopher Patti and Pema Phunkhang and Fritz Pierre and Margaret Priest and Sujaa Raghuraman and Filip Rege and Rebecca Reyes and Cecil Rise and Peter Rogov and Keenan Ross and Elizabeth Ryan and Sampath Settipalli and Terry Shea and Ngawang Sherpa and Lu Shi and Diana Shih and Todd Sparrow and Jessica Spaulding and John Stalker and Nicole Stange-Thomann and Sharon Stavropoulos and Catherine Stone and Christopher Strader and Senait Tesfaye and Talene Thomson and Yama Thoulutsang and Dawa Thoulutsang and Kerri Topham and Ira Topping and Tsamla Tsamla and Helen Vassiliev and Andy Vo and Tsering Wangchuk and Tsering Wangdi and Michael Weiand and Jane Wilkinson and Adam Wilson and Shailendra Yadav and Geneva Young and Qing Yu and Lisa Zembek and Danni Zhong and Andrew Zimmer and Zac Zwirko and Jaffe, {David B} and Pablo Alvarez and Will Brockman and Jonathan Butler and CheeWhye Chin and Sante Gnerre and Manfred Grabherr and Michael Kleber and Evan Mauceli and Iain MacCallum",
    year = "2007",
    month = "11",
    day = "8",
    doi = "10.1038/nature06341",
    language = "English",
    volume = "450",
    pages = "203--218",
    journal = "Nature",
    issn = "0028-0836",
    publisher = "Nature Publishing Group",
    number = "7167",

    }

    Clark, AG, Eisen, MB, Smith, DR, Bergman, CM, Oliver, B, Markow, TA, Kaufman, TC, Kellis, M, Gelbart, W, Iyer, VN, Pollard, DA, Sackton, TB, Larracuente, AM, Singh, ND, Abad, JP, Abt, DN, Adryan, B, Aguade, M, Akashi, H, Anderson, WW, Aquadro, CF, Ardell, DH, Arguello, R, Artieri, CG, Barbash, DA, Barker, D, Barsanti, P, Batterham, P, Batzoglou, S, Begun, D, Bhutkar, A, Blanco, E, Bosak, SA, Bradley, RK, Brand, AD, Brent, MR, Brooks, AN, Brown, RH, Butlin, RK, Caggese, C, Calvi, BR, Bernardo de Carvalho, A, Caspi, A, Castrezana, S, Celniker, SE, Chang, JL, Chapple, C, Chatterji, S, Chinwalla, A, Civetta, A, Clifton, SW, Comeron, JM, Costello, JC, Coyne, JA, Daub, J, David, RG, Delcher, AL, Delehaunty, K, Do, CB, Ebling, H, Edwards, K, Eickbush, T, Evans, JD, Filipski, A, Findeiss, S, Freyhult, E, Fulton, L, Fulton, R, Garcia, ACL, Gardiner, A, Garfield, DA, Garvin, BE, Gibson, G, Gilbert, D, Gnerre, S, Godfrey, J, Good, R, Gotea, V, Gravely, B, Greenberg, AJ, Griffiths-Jones, S, Gross, S, Guigo, R, Gustafson, EA, Haerty, W, Hahn, MW, Halligan, DL, Halpern, AL, Halter, GM, Han, MV, Heger, A, Hillier, L, Hinrichs, AS, Holmes, I, Hoskins, RA, Hubisz, MJ, Hultmark, D, Huntley, MA, Jaffe, DB, Jagadeeshan, S, Jeck, WR, Johnson, J, Jones, CD, Jordan, WC, Karpen, GH, Kataoka, E, Keightley, PD, Kheradpour, P, Kirkness, EF, Koerich, LB, Kristiansen, K, Kudrna, D, Kulathinal, RJ, Kumar, S, Kwok, R, Lander, E, Langley, CH, Lapoint, R, Lazzaro, BP, Lee, S-J, Levesque, L, Li, R, Lin, C-F, Lin, MF, Lindblad-Toh, K, Llopart, A, Long, M, Low, L, Lozovsky, E, Lu, J, Luo, M, Machado, CA, Makalowski, W, Marzo, M, Matsuda, M, Matzkin, L, McAllister, B, McBride, CS, McKernan, B, McKernan, K, Mendez-Lago, M, Minx, P, Mollenhauer, MU, Montooth, K, Mount, SM, Mu, X, Myers, E, Negre, B, Newfeld, S, Nielsen, R, Noor, MAF, O'Grady, P, Pachter, L, Papaceit, M, Parisi, MJ, Parisi, M, Parts, L, Pedersen, JS, Pesole, G, Phillippy, AM, Ponting, CP, Pop, M, Porcelli, D, Powell, JR, Prohaska, S, Pruitt, K, Puig, M, Quesneville, H, Ram, KR, Rand, D, Rasmussen, MD, Reed, LK, Reenan, R, Reily, A, Remington, KA, Rieger, TT, Ritchie, MG, Robin, C, Rogers, Y-H, Rohde, C, Rozas, J, Rubenfield, MJ, Ruiz, A, Russo, S, Salzberg, SL, Sanchez-Gracia, A, Saranga, DJ, Sato, H, Schaeffer, SW, Schatz, MC, Schlenke, T, Schwartz, R, Segarra, C, Singh, RS, Sirot, L, Sirota, M, Sisneros, NB, Smith, CD, Smith, TF, Spieth, J, Stage, DE, Stark, A, Stephan, W, Strausberg, RL, Strempel, S, Sturgill, D, Sutton, G, Sutton, GG, Tao, W, Teichmann, S, Tobari, YN, Tomimura, Y, Tsolas, JM, Valente, VLS, Venter, E, Venter, JC, Vicario, S, Vieira, FG, Vilella, AJ, Villasante, A, Walenz, B, Wang, J, Wasserman, M, Watts, T, Wilson, D, Wilson, RK, Wing, RA, Wolfner, MF, Wong, A, Wong, GK-S, Wu, C-I, Wu, G, Yamamoto, D, Yang, H-P, Yang, S-P, Yorke, JA, Yoshida, K, Zdobnov, E, Zhang, P, Zhang, Y, Zimin, AV, Baldwin, J, Abdouelleil, A, Abdulkadir, J, Abebe, A, Abera, B, Abreu, J, Acer, SC, Aftuck, L, Alexander, A, An, P, Anderson, E, Anderson, S, Arachi, H, Azer, M, Bachantsang, P, Barry, A, Bayul, T, Berlin, A, Bessette, D, Bloom, T, Blye, J, Boguslavskiy, L, Bonnet, C, Boukhgalter, B, Bourzgui, I, Brown, A, Cahill, P, Channer, S, Cheshatsang, Y, Chuda, L, Citroen, M, Collymore, A, Cooke, P, Costello, M, D'Aco, K, Daza, R, De Haan, G, DeGray, S, DeMaso, C, Dhargay, N, Dooley, K, Dooley, E, Doricent, M, Dorje, P, Dorjee, K, Dupes, A, Elong, R, Falk, J, Farina, A, Faro, S, Ferguson, D, Fisher, S, Foley, CD, Franke, A, Friedrich, D, Gadbois, L, Gearin, G, Gearin, CR, Giannoukos, G, Goode, T, Graham, J, Grandbois, E, Grewal, S, Gyaltsen, K, Hafez, N, Hagos, B, Hall, J, Henson, C, Hollinger, A, Honan, T, Huard, MD, Hughes, L, Hurhula, B, Husby, ME, Kamat, A, Kanga, B, Kashin, S, Khazanovich, D, Kisner, P, Lance, K, Lara, M, Lee, W, Lennon, N, Letendre, F, LeVine, R, Lipovsky, A, Liu, X, Liu, J, Liu, S, Lokyitsang, T, Lokyitsang, Y, Lubonja, R, Lui, A, MacDonald, P, Magnisalis, V, Maru, K, Matthews, C, McCusker, W, McDonough, S, Mehta, T, Meldrim, J, Meneus, L, Mihai, O, Mihalev, A, Mihova, T, Mittelman, R, Mlenga, V, Montmayeur, A, Mulrain, L, Navidi, A, Naylor, J, Negash, T, Nguyen, T, Nguyen, N, Nicol, R, Norbu, C, Norbu, N, Novod, N, O'Neill, B, Osman, S, Markiewicz, E, Oyono, OL, Patti, C, Phunkhang, P, Pierre, F, Priest, M, Raghuraman, S, Rege, F, Reyes, R, Rise, C, Rogov, P, Ross, K, Ryan, E, Settipalli, S, Shea, T, Sherpa, N, Shi, L, Shih, D, Sparrow, T, Spaulding, J, Stalker, J, Stange-Thomann, N, Stavropoulos, S, Stone, C, Strader, C, Tesfaye, S, Thomson, T, Thoulutsang, Y, Thoulutsang, D, Topham, K, Topping, I, Tsamla, T, Vassiliev, H, Vo, A, Wangchuk, T, Wangdi, T, Weiand, M, Wilkinson, J, Wilson, A, Yadav, S, Young, G, Yu, Q, Zembek, L, Zhong, D, Zimmer, A, Zwirko, Z, Jaffe, DB, Alvarez, P, Brockman, W, Butler, J, Chin, C, Gnerre, S, Grabherr, M, Kleber, M, Mauceli, E & MacCallum, I 2007, 'Evolution of genes and genomes on the Drosophila phylogeny' Nature, bind 450, nr. 7167, s. 203-218. https://doi.org/10.1038/nature06341

    Evolution of genes and genomes on the Drosophila phylogeny. / Clark, Andrew G; Eisen, Michael B; Smith, Douglas R; Bergman, Casey M; Oliver, Brian; Markow, Therese A; Kaufman, Thomas C; Kellis, Manolis; Gelbart, William; Iyer, Venky N; Pollard, Daniel A; Sackton, Timothy B; Larracuente, Amanda M; Singh, Nadia D; Abad, Jose P; Abt, Dawn N; Adryan, Boris; Aguade, Montserrat; Akashi, Hiroshi; Anderson, Wyatt W; Aquadro, Charles F; Ardell, David H; Arguello, Roman; Artieri, Carlo G; Barbash, Daniel A; Barker, Daniel; Barsanti, Paolo; Batterham, Phil; Batzoglou, Serafim; Begun, Dave; Bhutkar, Arjun; Blanco, Enrico; Bosak, Stephanie A; Bradley, Robert K; Brand, Adrianne D; Brent, Michael R; Brooks, Angela N; Brown, Randall H; Butlin, Roger K; Caggese, Corrado; Calvi, Brian R; Bernardo de Carvalho, A; Caspi, Anat; Castrezana, Sergio; Celniker, Susan E; Chang, Jean L; Chapple, Charles; Chatterji, Sourav; Chinwalla, Asif; Civetta, Alberto; Clifton, Sandra W; Comeron, Josep M; Costello, James C; Coyne, Jerry A; Daub, Jennifer; David, Robert G; Delcher, Arthur L; Delehaunty, Kim; Do, Chuong B; Ebling, Heather; Edwards, Kevin; Eickbush, Thomas; Evans, Jay D; Filipski, Alan; Findeiss, Sven; Freyhult, Eva; Fulton, Lucinda; Fulton, Robert; Garcia, Ana C L; Gardiner, Anastasia; Garfield, David A; Garvin, Barry E; Gibson, Greg; Gilbert, Don; Gnerre, Sante; Godfrey, Jennifer; Good, Robert; Gotea, Valer; Gravely, Brenton; Greenberg, Anthony J; Griffiths-Jones, Sam; Gross, Samuel; Guigo, Roderic; Gustafson, Erik A; Haerty, Wilfried; Hahn, Matthew W; Halligan, Daniel L; Halpern, Aaron L; Halter, Gillian M; Han, Mira V; Heger, Andreas; Hillier, LaDeana; Hinrichs, Angie S; Holmes, Ian; Hoskins, Roger A; Hubisz, Melissa J; Hultmark, Dan; Huntley, Melanie A; Jaffe, David B; Jagadeeshan, Santosh; Jeck, William R; Johnson, Justin; Jones, Corbin D; Jordan, William C; Karpen, Gary H; Kataoka, Eiko; Keightley, Peter D; Kheradpour, Pouya; Kirkness, Ewen F; Koerich, Leonardo B; Kristiansen, Karsten; Kudrna, Dave; Kulathinal, Rob J; Kumar, Sudhir; Kwok, Roberta; Lander, Eric; Langley, Charles H; Lapoint, Richard; Lazzaro, Brian P; Lee, So-Jeong; Levesque, Lisa; Li, Ruiqiang; Lin, Chiao-Feng; Lin, Michael F; Lindblad-Toh, Kerstin; Llopart, Ana; Long, Manyuan; Low, Lloyd; Lozovsky, Elena; Lu, Jian; Luo, Meizhong; Machado, Carlos A; Makalowski, Wojciech; Marzo, Mar; Matsuda, Muneo; Matzkin, Luciano; McAllister, Bryant; McBride, Carolyn S; McKernan, Brendan; McKernan, Kevin; Mendez-Lago, Maria; Minx, Patrick; Mollenhauer, Michael U; Montooth, Kristi; Mount, Stephen M; Mu, Xu; Myers, Eugene; Negre, Barbara; Newfeld, Stuart; Nielsen, Rasmus; Noor, Mohamed A F; O'Grady, Patrick; Pachter, Lior; Papaceit, Montserrat; Parisi, Matthew J; Parisi, Michael; Parts, Leopold; Pedersen, Jakob S; Pesole, Graziano; Phillippy, Adam M; Ponting, Chris P; Pop, Mihai; Porcelli, Damiano; Powell, Jeffrey R; Prohaska, Sonja; Pruitt, Kim; Puig, Marta; Quesneville, Hadi; Ram, Kristipati Ravi; Rand, David; Rasmussen, Matthew D; Reed, Laura K; Reenan, Robert; Reily, Amy; Remington, Karin A; Rieger, Tania T; Ritchie, Michael G; Robin, Charles; Rogers, Yu-Hui; Rohde, Claudia; Rozas, Julio; Rubenfield, Marc J; Ruiz, Alfredo; Russo, Susan; Salzberg, Steven L; Sanchez-Gracia, Alejandro; Saranga, David J; Sato, Hajime; Schaeffer, Stephen W; Schatz, Michael C; Schlenke, Todd; Schwartz, Russell; Segarra, Carmen; Singh, Rama S; Sirot, Laura; Sirota, Marina; Sisneros, Nicholas B; Smith, Chris D; Smith, Temple F; Spieth, John; Stage, Deborah E; Stark, Alexander; Stephan, Wolfgang; Strausberg, Robert L; Strempel, Sebastian; Sturgill, David; Sutton, Granger; Sutton, Granger G; Tao, Wei; Teichmann, Sarah; Tobari, Yoshiko N; Tomimura, Yoshihiko; Tsolas, Jason M; Valente, Vera L S; Venter, Eli; Venter, J Craig; Vicario, Saverio; Vieira, Filipe G; Vilella, Albert J; Villasante, Alfredo; Walenz, Brian; Wang, Jun; Wasserman, Marvin; Watts, Thomas; Wilson, Derek; Wilson, Richard K; Wing, Rod A; Wolfner, Mariana F; Wong, Alex; Wong, Gane Ka-Shu; Wu, Chung-I; Wu, Gabriel; Yamamoto, Daisuke; Yang, Hsiao-Pei; Yang, Shiaw-Pyng; Yorke, James A; Yoshida, Kiyohito; Zdobnov, Evgeny; Zhang, Peili; Zhang, Yu; Zimin, Aleksey V; Baldwin, Jennifer; Abdouelleil, Amr; Abdulkadir, Jamal; Abebe, Adal; Abera, Brikti; Abreu, Justin; Acer, St Christophe; Aftuck, Lynne; Alexander, Allen; An, Peter; Anderson, Erica; Anderson, Scott; Arachi, Harindra; Azer, Marc; Bachantsang, Pasang; Barry, Andrew; Bayul, Tashi; Berlin, Aaron; Bessette, Daniel; Bloom, Toby; Blye, Jason; Boguslavskiy, Leonid; Bonnet, Claude; Boukhgalter, Boris; Bourzgui, Imane; Brown, Adam; Cahill, Patrick; Channer, Sheridon; Cheshatsang, Yama; Chuda, Lisa; Citroen, Mieke; Collymore, Alville; Cooke, Patrick; Costello, Maura; D'Aco, Katie; Daza, Riza; De Haan, Georgius; DeGray, Stuart; DeMaso, Christina; Dhargay, Norbu; Dooley, Kimberly; Dooley, Erin; Doricent, Missole; Dorje, Passang; Dorjee, Kunsang; Dupes, Alan; Elong, Richard; Falk, Jill; Farina, Abderrahim; Faro, Susan; Ferguson, Diallo; Fisher, Sheila; Foley, Chelsea D; Franke, Alicia; Friedrich, Dennis; Gadbois, Loryn; Gearin, Gary; Gearin, Christina R; Giannoukos, Georgia; Goode, Tina; Graham, Joseph; Grandbois, Edward; Grewal, Sharleen; Gyaltsen, Kunsang; Hafez, Nabil; Hagos, Birhane; Hall, Jennifer; Henson, Charlotte; Hollinger, Andrew; Honan, Tracey; Huard, Monika D; Hughes, Leanne; Hurhula, Brian; Husby, M Erii; Kamat, Asha; Kanga, Ben; Kashin, Seva; Khazanovich, Dmitry; Kisner, Peter; Lance, Krista; Lara, Marcia; Lee, William; Lennon, Niall; Letendre, Frances; LeVine, Rosie; Lipovsky, Alex; Liu, Xiaohong; Liu, Jinlei; Liu, Shangtao; Lokyitsang, Tashi; Lokyitsang, Yeshi; Lubonja, Rakela; Lui, Annie; MacDonald, Pen; Magnisalis, Vasilia; Maru, Kebede; Matthews, Charles; McCusker, William; McDonough, Susan; Mehta, Teena; Meldrim, James; Meneus, Louis; Mihai, Oana; Mihalev, Atanas; Mihova, Tanya; Mittelman, Rachel; Mlenga, Valentine; Montmayeur, Anna; Mulrain, Leonidas; Navidi, Adam; Naylor, Jerome; Negash, Tamrat; Nguyen, Thu; Nguyen, Nga; Nicol, Robert; Norbu, Choe; Norbu, Nyima; Novod, Nathaniel; O'Neill, Barry; Osman, Sahal; Markiewicz, Eva; Oyono, Otero L; Patti, Christopher; Phunkhang, Pema; Pierre, Fritz; Priest, Margaret; Raghuraman, Sujaa; Rege, Filip; Reyes, Rebecca; Rise, Cecil; Rogov, Peter; Ross, Keenan; Ryan, Elizabeth; Settipalli, Sampath; Shea, Terry; Sherpa, Ngawang; Shi, Lu; Shih, Diana; Sparrow, Todd; Spaulding, Jessica; Stalker, John; Stange-Thomann, Nicole; Stavropoulos, Sharon; Stone, Catherine; Strader, Christopher; Tesfaye, Senait; Thomson, Talene; Thoulutsang, Yama; Thoulutsang, Dawa; Topham, Kerri; Topping, Ira; Tsamla, Tsamla; Vassiliev, Helen; Vo, Andy; Wangchuk, Tsering; Wangdi, Tsering; Weiand, Michael; Wilkinson, Jane; Wilson, Adam; Yadav, Shailendra; Young, Geneva; Yu, Qing; Zembek, Lisa; Zhong, Danni; Zimmer, Andrew; Zwirko, Zac; Jaffe, David B; Alvarez, Pablo; Brockman, Will; Butler, Jonathan; Chin, CheeWhye; Gnerre, Sante; Grabherr, Manfred; Kleber, Michael; Mauceli, Evan; MacCallum, Iain.

    I: Nature, Bind 450, Nr. 7167, 08.11.2007, s. 203-218.

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

    TY - JOUR

    T1 - Evolution of genes and genomes on the Drosophila phylogeny

    AU - Clark, Andrew G

    AU - Eisen, Michael B

    AU - Smith, Douglas R

    AU - Bergman, Casey M

    AU - Oliver, Brian

    AU - Markow, Therese A

    AU - Kaufman, Thomas C

    AU - Kellis, Manolis

    AU - Gelbart, William

    AU - Iyer, Venky N

    AU - Pollard, Daniel A

    AU - Sackton, Timothy B

    AU - Larracuente, Amanda M

    AU - Singh, Nadia D

    AU - Abad, Jose P

    AU - Abt, Dawn N

    AU - Adryan, Boris

    AU - Aguade, Montserrat

    AU - Akashi, Hiroshi

    AU - Anderson, Wyatt W

    AU - Aquadro, Charles F

    AU - Ardell, David H

    AU - Arguello, Roman

    AU - Artieri, Carlo G

    AU - Barbash, Daniel A

    AU - Barker, Daniel

    AU - Barsanti, Paolo

    AU - Batterham, Phil

    AU - Batzoglou, Serafim

    AU - Begun, Dave

    AU - Bhutkar, Arjun

    AU - Blanco, Enrico

    AU - Bosak, Stephanie A

    AU - Bradley, Robert K

    AU - Brand, Adrianne D

    AU - Brent, Michael R

    AU - Brooks, Angela N

    AU - Brown, Randall H

    AU - Butlin, Roger K

    AU - Caggese, Corrado

    AU - Calvi, Brian R

    AU - Bernardo de Carvalho, A

    AU - Caspi, Anat

    AU - Castrezana, Sergio

    AU - Celniker, Susan E

    AU - Chang, Jean L

    AU - Chapple, Charles

    AU - Chatterji, Sourav

    AU - Chinwalla, Asif

    AU - Civetta, Alberto

    AU - Clifton, Sandra W

    AU - Comeron, Josep M

    AU - Costello, James C

    AU - Coyne, Jerry A

    AU - Daub, Jennifer

    AU - David, Robert G

    AU - Delcher, Arthur L

    AU - Delehaunty, Kim

    AU - Do, Chuong B

    AU - Ebling, Heather

    AU - Edwards, Kevin

    AU - Eickbush, Thomas

    AU - Evans, Jay D

    AU - Filipski, Alan

    AU - Findeiss, Sven

    AU - Freyhult, Eva

    AU - Fulton, Lucinda

    AU - Fulton, Robert

    AU - Garcia, Ana C L

    AU - Gardiner, Anastasia

    AU - Garfield, David A

    AU - Garvin, Barry E

    AU - Gibson, Greg

    AU - Gilbert, Don

    AU - Gnerre, Sante

    AU - Godfrey, Jennifer

    AU - Good, Robert

    AU - Gotea, Valer

    AU - Gravely, Brenton

    AU - Greenberg, Anthony J

    AU - Griffiths-Jones, Sam

    AU - Gross, Samuel

    AU - Guigo, Roderic

    AU - Gustafson, Erik A

    AU - Haerty, Wilfried

    AU - Hahn, Matthew W

    AU - Halligan, Daniel L

    AU - Halpern, Aaron L

    AU - Halter, Gillian M

    AU - Han, Mira V

    AU - Heger, Andreas

    AU - Hillier, LaDeana

    AU - Hinrichs, Angie S

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    AU - Hoskins, Roger A

    AU - Hubisz, Melissa J

    AU - Hultmark, Dan

    AU - Huntley, Melanie A

    AU - Jaffe, David B

    AU - Jagadeeshan, Santosh

    AU - Jeck, William R

    AU - Johnson, Justin

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    AU - Jordan, William C

    AU - Karpen, Gary H

    AU - Kataoka, Eiko

    AU - Keightley, Peter D

    AU - Kheradpour, Pouya

    AU - Kirkness, Ewen F

    AU - Koerich, Leonardo B

    AU - Kristiansen, Karsten

    AU - Kudrna, Dave

    AU - Kulathinal, Rob J

    AU - Kumar, Sudhir

    AU - Kwok, Roberta

    AU - Lander, Eric

    AU - Langley, Charles H

    AU - Lapoint, Richard

    AU - Lazzaro, Brian P

    AU - Lee, So-Jeong

    AU - Levesque, Lisa

    AU - Li, Ruiqiang

    AU - Lin, Chiao-Feng

    AU - Lin, Michael F

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    AU - Llopart, Ana

    AU - Long, Manyuan

    AU - Low, Lloyd

    AU - Lozovsky, Elena

    AU - Lu, Jian

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    AU - Machado, Carlos A

    AU - Makalowski, Wojciech

    AU - Marzo, Mar

    AU - Matsuda, Muneo

    AU - Matzkin, Luciano

    AU - McAllister, Bryant

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    AU - McKernan, Brendan

    AU - McKernan, Kevin

    AU - Mendez-Lago, Maria

    AU - Minx, Patrick

    AU - Mollenhauer, Michael U

    AU - Montooth, Kristi

    AU - Mount, Stephen M

    AU - Mu, Xu

    AU - Myers, Eugene

    AU - Negre, Barbara

    AU - Newfeld, Stuart

    AU - Nielsen, Rasmus

    AU - Noor, Mohamed A F

    AU - O'Grady, Patrick

    AU - Pachter, Lior

    AU - Papaceit, Montserrat

    AU - Parisi, Matthew J

    AU - Parisi, Michael

    AU - Parts, Leopold

    AU - Pedersen, Jakob S

    AU - Pesole, Graziano

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    AU - Ponting, Chris P

    AU - Pop, Mihai

    AU - Porcelli, Damiano

    AU - Powell, Jeffrey R

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    AU - Pruitt, Kim

    AU - Puig, Marta

    AU - Quesneville, Hadi

    AU - Ram, Kristipati Ravi

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    AU - Rasmussen, Matthew D

    AU - Reed, Laura K

    AU - Reenan, Robert

    AU - Reily, Amy

    AU - Remington, Karin A

    AU - Rieger, Tania T

    AU - Ritchie, Michael G

    AU - Robin, Charles

    AU - Rogers, Yu-Hui

    AU - Rohde, Claudia

    AU - Rozas, Julio

    AU - Rubenfield, Marc J

    AU - Ruiz, Alfredo

    AU - Russo, Susan

    AU - Salzberg, Steven L

    AU - Sanchez-Gracia, Alejandro

    AU - Saranga, David J

    AU - Sato, Hajime

    AU - Schaeffer, Stephen W

    AU - Schatz, Michael C

    AU - Schlenke, Todd

    AU - Schwartz, Russell

    AU - Segarra, Carmen

    AU - Singh, Rama S

    AU - Sirot, Laura

    AU - Sirota, Marina

    AU - Sisneros, Nicholas B

    AU - Smith, Chris D

    AU - Smith, Temple F

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    AU - Stark, Alexander

    AU - Stephan, Wolfgang

    AU - Strausberg, Robert L

    AU - Strempel, Sebastian

    AU - Sturgill, David

    AU - Sutton, Granger

    AU - Sutton, Granger G

    AU - Tao, Wei

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    AU - Tobari, Yoshiko N

    AU - Tomimura, Yoshihiko

    AU - Tsolas, Jason M

    AU - Valente, Vera L S

    AU - Venter, Eli

    AU - Venter, J Craig

    AU - Vicario, Saverio

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    AU - Walenz, Brian

    AU - Wang, Jun

    AU - Wasserman, Marvin

    AU - Watts, Thomas

    AU - Wilson, Derek

    AU - Wilson, Richard K

    AU - Wing, Rod A

    AU - Wolfner, Mariana F

    AU - Wong, Alex

    AU - Wong, Gane Ka-Shu

    AU - Wu, Chung-I

    AU - Wu, Gabriel

    AU - Yamamoto, Daisuke

    AU - Yang, Hsiao-Pei

    AU - Yang, Shiaw-Pyng

    AU - Yorke, James A

    AU - Yoshida, Kiyohito

    AU - Zdobnov, Evgeny

    AU - Zhang, Peili

    AU - Zhang, Yu

    AU - Zimin, Aleksey V

    AU - Baldwin, Jennifer

    AU - Abdouelleil, Amr

    AU - Abdulkadir, Jamal

    AU - Abebe, Adal

    AU - Abera, Brikti

    AU - Abreu, Justin

    AU - Acer, St Christophe

    AU - Aftuck, Lynne

    AU - Alexander, Allen

    AU - An, Peter

    AU - Anderson, Erica

    AU - Anderson, Scott

    AU - Arachi, Harindra

    AU - Azer, Marc

    AU - Bachantsang, Pasang

    AU - Barry, Andrew

    AU - Bayul, Tashi

    AU - Berlin, Aaron

    AU - Bessette, Daniel

    AU - Bloom, Toby

    AU - Blye, Jason

    AU - Boguslavskiy, Leonid

    AU - Bonnet, Claude

    AU - Boukhgalter, Boris

    AU - Bourzgui, Imane

    AU - Brown, Adam

    AU - Cahill, Patrick

    AU - Channer, Sheridon

    AU - Cheshatsang, Yama

    AU - Chuda, Lisa

    AU - Citroen, Mieke

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    AU - Costello, Maura

    AU - D'Aco, Katie

    AU - Daza, Riza

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    AU - DeGray, Stuart

    AU - DeMaso, Christina

    AU - Dhargay, Norbu

    AU - Dooley, Kimberly

    AU - Dooley, Erin

    AU - Doricent, Missole

    AU - Dorje, Passang

    AU - Dorjee, Kunsang

    AU - Dupes, Alan

    AU - Elong, Richard

    AU - Falk, Jill

    AU - Farina, Abderrahim

    AU - Faro, Susan

    AU - Ferguson, Diallo

    AU - Fisher, Sheila

    AU - Foley, Chelsea D

    AU - Franke, Alicia

    AU - Friedrich, Dennis

    AU - Gadbois, Loryn

    AU - Gearin, Gary

    AU - Gearin, Christina R

    AU - Giannoukos, Georgia

    AU - Goode, Tina

    AU - Graham, Joseph

    AU - Grandbois, Edward

    AU - Grewal, Sharleen

    AU - Gyaltsen, Kunsang

    AU - Hafez, Nabil

    AU - Hagos, Birhane

    AU - Hall, Jennifer

    AU - Henson, Charlotte

    AU - Hollinger, Andrew

    AU - Honan, Tracey

    AU - Huard, Monika D

    AU - Hughes, Leanne

    AU - Hurhula, Brian

    AU - Husby, M Erii

    AU - Kamat, Asha

    AU - Kanga, Ben

    AU - Kashin, Seva

    AU - Khazanovich, Dmitry

    AU - Kisner, Peter

    AU - Lance, Krista

    AU - Lara, Marcia

    AU - Lee, William

    AU - Lennon, Niall

    AU - Letendre, Frances

    AU - LeVine, Rosie

    AU - Lipovsky, Alex

    AU - Liu, Xiaohong

    AU - Liu, Jinlei

    AU - Liu, Shangtao

    AU - Lokyitsang, Tashi

    AU - Lokyitsang, Yeshi

    AU - Lubonja, Rakela

    AU - Lui, Annie

    AU - MacDonald, Pen

    AU - Magnisalis, Vasilia

    AU - Maru, Kebede

    AU - Matthews, Charles

    AU - McCusker, William

    AU - McDonough, Susan

    AU - Mehta, Teena

    AU - Meldrim, James

    AU - Meneus, Louis

    AU - Mihai, Oana

    AU - Mihalev, Atanas

    AU - Mihova, Tanya

    AU - Mittelman, Rachel

    AU - Mlenga, Valentine

    AU - Montmayeur, Anna

    AU - Mulrain, Leonidas

    AU - Navidi, Adam

    AU - Naylor, Jerome

    AU - Negash, Tamrat

    AU - Nguyen, Thu

    AU - Nguyen, Nga

    AU - Nicol, Robert

    AU - Norbu, Choe

    AU - Norbu, Nyima

    AU - Novod, Nathaniel

    AU - O'Neill, Barry

    AU - Osman, Sahal

    AU - Markiewicz, Eva

    AU - Oyono, Otero L

    AU - Patti, Christopher

    AU - Phunkhang, Pema

    AU - Pierre, Fritz

    AU - Priest, Margaret

    AU - Raghuraman, Sujaa

    AU - Rege, Filip

    AU - Reyes, Rebecca

    AU - Rise, Cecil

    AU - Rogov, Peter

    AU - Ross, Keenan

    AU - Ryan, Elizabeth

    AU - Settipalli, Sampath

    AU - Shea, Terry

    AU - Sherpa, Ngawang

    AU - Shi, Lu

    AU - Shih, Diana

    AU - Sparrow, Todd

    AU - Spaulding, Jessica

    AU - Stalker, John

    AU - Stange-Thomann, Nicole

    AU - Stavropoulos, Sharon

    AU - Stone, Catherine

    AU - Strader, Christopher

    AU - Tesfaye, Senait

    AU - Thomson, Talene

    AU - Thoulutsang, Yama

    AU - Thoulutsang, Dawa

    AU - Topham, Kerri

    AU - Topping, Ira

    AU - Tsamla, Tsamla

    AU - Vassiliev, Helen

    AU - Vo, Andy

    AU - Wangchuk, Tsering

    AU - Wangdi, Tsering

    AU - Weiand, Michael

    AU - Wilkinson, Jane

    AU - Wilson, Adam

    AU - Yadav, Shailendra

    AU - Young, Geneva

    AU - Yu, Qing

    AU - Zembek, Lisa

    AU - Zhong, Danni

    AU - Zimmer, Andrew

    AU - Zwirko, Zac

    AU - Jaffe, David B

    AU - Alvarez, Pablo

    AU - Brockman, Will

    AU - Butler, Jonathan

    AU - Chin, CheeWhye

    AU - Gnerre, Sante

    AU - Grabherr, Manfred

    AU - Kleber, Michael

    AU - Mauceli, Evan

    AU - MacCallum, Iain

    PY - 2007/11/8

    Y1 - 2007/11/8

    N2 - Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.

    AB - Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.

    KW - Animals

    KW - Codon

    KW - DNA Transposable Elements

    KW - Drosophila

    KW - Drosophila Proteins

    KW - Evolution, Molecular

    KW - Gene Order

    KW - Genes, Insect

    KW - Genome, Insect

    KW - Genome, Mitochondrial

    KW - Genomics

    KW - Immunity

    KW - Multigene Family

    KW - Phylogeny

    KW - RNA, Untranslated

    KW - Reproduction

    KW - Sequence Alignment

    KW - Sequence Analysis, DNA

    KW - Synteny

    U2 - 10.1038/nature06341

    DO - 10.1038/nature06341

    M3 - Journal article

    VL - 450

    SP - 203

    EP - 218

    JO - Nature

    JF - Nature

    SN - 0028-0836

    IS - 7167

    ER -

    Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 2007 nov 8;450(7167):203-218. https://doi.org/10.1038/nature06341