Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology

Syed Shah Hassan, Luis Carlos Guimarães, Ulisses de Pádua Pereira, Arshad Islam, Amjad Ali, Syeda Marriam Bakhtiar, Dayana Ribeiro, Anderson Rodrigues Dos Santos, Siomar de Castro Soares, Fernanda Dorella, Anne Cybelle Pinto, Maria Paula Cruz Schneider, Maria Silvanira Barbosa, Síntia Almeida, Vinícius Abreu, Flávia Aburjaile, Adriana Ribeiro Carneiro, Louise Teixeira Cerdeira, Karina Fiaux, Eudes Guilherme Vieria BarbosaCarlos Diniz, Flavia S Rocha, Rommel Thiago Jucá Ramos, Neha Jain, Sandeep Tiwari, Debmalya Barh, Anderson Miyoshi, Borna Müller, Artur Silva, Vasco Azevedo

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Resumé

The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non-sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19%. The analysis of the genome sequence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis.
OriginalsprogEngelsk
TidsskriftStandards in Genomic Sciences
Vol/bind7
Udgave nummer2
Sider (fra-til)189-99
Antal sider11
ISSN1944-3277
DOI
StatusUdgivet - 19. dec. 2012
Udgivet eksterntJa

Fingeraftryk

Corynebacterium pseudotuberculosis
Pseudogenes
Transfer RNA
rRNA Genes
Sequence Analysis
Virulence
Lymph Nodes
Lung
Liver
Proteins

Citer dette

Hassan, Syed Shah ; Guimarães, Luis Carlos ; Pereira, Ulisses de Pádua ; Islam, Arshad ; Ali, Amjad ; Bakhtiar, Syeda Marriam ; Ribeiro, Dayana ; Rodrigues Dos Santos, Anderson ; Soares, Siomar de Castro ; Dorella, Fernanda ; Pinto, Anne Cybelle ; Schneider, Maria Paula Cruz ; Barbosa, Maria Silvanira ; Almeida, Síntia ; Abreu, Vinícius ; Aburjaile, Flávia ; Carneiro, Adriana Ribeiro ; Cerdeira, Louise Teixeira ; Fiaux, Karina ; Barbosa, Eudes Guilherme Vieria ; Diniz, Carlos ; Rocha, Flavia S ; Ramos, Rommel Thiago Jucá ; Jain, Neha ; Tiwari, Sandeep ; Barh, Debmalya ; Miyoshi, Anderson ; Müller, Borna ; Silva, Artur ; Azevedo, Vasco. / Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. I: Standards in Genomic Sciences. 2012 ; Bind 7, Nr. 2. s. 189-99.
@article{1f4bb028affb48b5a5c7394ea889ee66,
title = "Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology",
abstract = "The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non-sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19{\%}. The analysis of the genome sequence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis.",
author = "Hassan, {Syed Shah} and Guimar{\~a}es, {Luis Carlos} and Pereira, {Ulisses de P{\'a}dua} and Arshad Islam and Amjad Ali and Bakhtiar, {Syeda Marriam} and Dayana Ribeiro and {Rodrigues Dos Santos}, Anderson and Soares, {Siomar de Castro} and Fernanda Dorella and Pinto, {Anne Cybelle} and Schneider, {Maria Paula Cruz} and Barbosa, {Maria Silvanira} and S{\'i}ntia Almeida and Vin{\'i}cius Abreu and Fl{\'a}via Aburjaile and Carneiro, {Adriana Ribeiro} and Cerdeira, {Louise Teixeira} and Karina Fiaux and Barbosa, {Eudes Guilherme Vieria} and Carlos Diniz and Rocha, {Flavia S} and Ramos, {Rommel Thiago Juc{\'a}} and Neha Jain and Sandeep Tiwari and Debmalya Barh and Anderson Miyoshi and Borna M{\"u}ller and Artur Silva and Vasco Azevedo",
year = "2012",
month = "12",
day = "19",
doi = "10.4056/sigs.3066455",
language = "English",
volume = "7",
pages = "189--99",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "BioMed Central",
number = "2",

}

Hassan, SS, Guimarães, LC, Pereira, UDP, Islam, A, Ali, A, Bakhtiar, SM, Ribeiro, D, Rodrigues Dos Santos, A, Soares, SDC, Dorella, F, Pinto, AC, Schneider, MPC, Barbosa, MS, Almeida, S, Abreu, V, Aburjaile, F, Carneiro, AR, Cerdeira, LT, Fiaux, K, Barbosa, EGV, Diniz, C, Rocha, FS, Ramos, RTJ, Jain, N, Tiwari, S, Barh, D, Miyoshi, A, Müller, B, Silva, A & Azevedo, V 2012, 'Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology', Standards in Genomic Sciences, bind 7, nr. 2, s. 189-99. https://doi.org/10.4056/sigs.3066455

Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. / Hassan, Syed Shah; Guimarães, Luis Carlos; Pereira, Ulisses de Pádua; Islam, Arshad; Ali, Amjad; Bakhtiar, Syeda Marriam; Ribeiro, Dayana; Rodrigues Dos Santos, Anderson; Soares, Siomar de Castro; Dorella, Fernanda; Pinto, Anne Cybelle; Schneider, Maria Paula Cruz; Barbosa, Maria Silvanira; Almeida, Síntia; Abreu, Vinícius; Aburjaile, Flávia; Carneiro, Adriana Ribeiro; Cerdeira, Louise Teixeira; Fiaux, Karina; Barbosa, Eudes Guilherme Vieria; Diniz, Carlos; Rocha, Flavia S; Ramos, Rommel Thiago Jucá; Jain, Neha; Tiwari, Sandeep; Barh, Debmalya; Miyoshi, Anderson; Müller, Borna; Silva, Artur; Azevedo, Vasco.

I: Standards in Genomic Sciences, Bind 7, Nr. 2, 19.12.2012, s. 189-99.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

TY - JOUR

T1 - Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology

AU - Hassan, Syed Shah

AU - Guimarães, Luis Carlos

AU - Pereira, Ulisses de Pádua

AU - Islam, Arshad

AU - Ali, Amjad

AU - Bakhtiar, Syeda Marriam

AU - Ribeiro, Dayana

AU - Rodrigues Dos Santos, Anderson

AU - Soares, Siomar de Castro

AU - Dorella, Fernanda

AU - Pinto, Anne Cybelle

AU - Schneider, Maria Paula Cruz

AU - Barbosa, Maria Silvanira

AU - Almeida, Síntia

AU - Abreu, Vinícius

AU - Aburjaile, Flávia

AU - Carneiro, Adriana Ribeiro

AU - Cerdeira, Louise Teixeira

AU - Fiaux, Karina

AU - Barbosa, Eudes Guilherme Vieria

AU - Diniz, Carlos

AU - Rocha, Flavia S

AU - Ramos, Rommel Thiago Jucá

AU - Jain, Neha

AU - Tiwari, Sandeep

AU - Barh, Debmalya

AU - Miyoshi, Anderson

AU - Müller, Borna

AU - Silva, Artur

AU - Azevedo, Vasco

PY - 2012/12/19

Y1 - 2012/12/19

N2 - The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non-sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19%. The analysis of the genome sequence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis.

AB - The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non-sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19%. The analysis of the genome sequence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis.

U2 - 10.4056/sigs.3066455

DO - 10.4056/sigs.3066455

M3 - Journal article

C2 - 23408795

VL - 7

SP - 189

EP - 199

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 2

ER -