BioAtlas: Interactive web service for microbial distribution analysis

Publikation: Konferencebidrag uden forlag/tidsskriftPosterFormidling

Resumé

Massive amounts of 16S rRNA sequencing data have been stored in publicly accessible databases, such as GOLD, SILVA, GreenGenes (GG), and the Ribosomal Database Project (RDP). Many of these sequences are tagged with geo-locations. Nevertheless, researchers currently lack a user-friendly tool to analyze microbial distribution in a location-specific context. BioAtlas is an interactive web application that closes this gap between sequence databases, taxonomy profiling and geo/body-location information. It enables users to browse taxonomically annotated sequences across (i) the world map, (ii) human body maps and (iii) user-defined maps. It further allows for (iv) uploading of own sample data, which can be placed on existing maps to (v) browse the distribution of the associated taxonomies. Finally, BioAtlas enables users to (vi) contribute custom maps (e.g. for plants or animals) and to map taxonomies to pre-defined map locations. In summary, BioAtlas facilitates map-supported browsing of public 16S rRNA sequence data and analyses of user-provided sequences without requiring manual mapping to taxonomies and existing databases. Availability: http://bioatlas.compbio.sdu.dk/
OriginalsprogEngelsk
Publikationsdato21. jul. 2017
StatusUdgivet - 21. jul. 2017
BegivenhedInternational Society for Computational Biology - Prague Congress Centre (PCC), 5. kvetna 1640/65, Nusle 140 00 Prague 4, Czech Republic, Prague, Tjekkiet
Varighed: 21. jul. 201725. jul. 2017
https://www.iscb.org/ismbeccb2017

Konference

KonferenceInternational Society for Computational Biology
Lokation Prague Congress Centre (PCC), 5. kvetna 1640/65, Nusle 140 00 Prague 4, Czech Republic
LandTjekkiet
ByPrague
Periode21/07/201725/07/2017
Internetadresse

Fingeraftryk

services
distribution
analysis
browsing
animal
public
world
human body
project
customs

Citer dette

Lund, J., List, M., & Baumbach, J. (2017). BioAtlas: Interactive web service for microbial distribution analysis. Poster session præsenteret på International Society for Computational Biology, Prague, Tjekkiet.
Lund, Jesper ; List, Markus ; Baumbach, Jan. / BioAtlas: Interactive web service for microbial distribution analysis. Poster session præsenteret på International Society for Computational Biology, Prague, Tjekkiet.
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title = "BioAtlas: Interactive web service for microbial distribution analysis",
abstract = "Massive amounts of 16S rRNA sequencing data have been stored in publicly accessible databases, such as GOLD, SILVA, GreenGenes (GG), and the Ribosomal Database Project (RDP). Many of these sequences are tagged with geo-locations. Nevertheless, researchers currently lack a user-friendly tool to analyze microbial distribution in a location-specific context. BioAtlas is an interactive web application that closes this gap between sequence databases, taxonomy profiling and geo/body-location information. It enables users to browse taxonomically annotated sequences across (i) the world map, (ii) human body maps and (iii) user-defined maps. It further allows for (iv) uploading of own sample data, which can be placed on existing maps to (v) browse the distribution of the associated taxonomies. Finally, BioAtlas enables users to (vi) contribute custom maps (e.g. for plants or animals) and to map taxonomies to pre-defined map locations. In summary, BioAtlas facilitates map-supported browsing of public 16S rRNA sequence data and analyses of user-provided sequences without requiring manual mapping to taxonomies and existing databases. Availability: http://bioatlas.compbio.sdu.dk/",
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Lund, J, List, M & Baumbach, J 2017, 'BioAtlas: Interactive web service for microbial distribution analysis' International Society for Computational Biology, Prague, Tjekkiet, 21/07/2017 - 25/07/2017, .

BioAtlas: Interactive web service for microbial distribution analysis. / Lund, Jesper; List, Markus; Baumbach, Jan.

2017. Poster session præsenteret på International Society for Computational Biology, Prague, Tjekkiet.

Publikation: Konferencebidrag uden forlag/tidsskriftPosterFormidling

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Lund J, List M, Baumbach J. BioAtlas: Interactive web service for microbial distribution analysis. 2017. Poster session præsenteret på International Society for Computational Biology, Prague, Tjekkiet.