Age patterns of intra-pair DNA methylation discordance in twins: Sex difference in epigenomic instability and implication on survival

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Aging is a biological process linked to specific patterns and changes in the epigenome. We hypothesize that age-related variation in the DNA methylome could reflect cumulative environmental modulation to the epigenome which could impact epigenomic instability and survival differentially by sex. To test the hypothesis, we performed sex-stratified epigenome-wide association studies on age-related intra-pair DNA methylation discordance in 492 twins aged 56–80 years. We identified 3084 CpGs showing increased methylation variability with age (FDR < 0.05, 7 CpGs with p < 1e-07) in male twins but no significant site found in female twins. The results were replicated in an independent cohort of 292 twins aged 30–74 years with 37% of the discovery CpGs successfully replicated in male twins. Functional annotation showed that genes linked to the identified CpGs were significantly enriched in signaling pathways, neurological functions, extracellular matrix assembly, and cancer. We further explored the implication of discovery CpGs on individual survival in an old cohort of 224 twins (220 deceased). In total, 264 CpGs displayed significant association with risk of death in male twins. In female twins, 175 of the male discovery CpGs also showed non-random correlation with mortality. Intra-pair comparison showed that majority of the discovery CpGs have higher methylation in the longer-lived twins suggesting that lose of DNA methylation during aging contributes to increased risk of death which is more pronounced in male twins. In conclusion, age-related epigenomic instability in the DNA methylome is more evident in males than in females and could impact individual survival and contribute to sex difference in human lifespan.

TidsskriftAging Cell
Udgave nummer9
StatusUdgivet - sep. 2021

Bibliografisk note

Funding Information:
This study was supported by grants from DFF research project 1 from the Danish Council for Independent Research, Medical Sciences (DFF‐FSS): DFF – 6110‐00114; Lundbeck Foundation [grant number R170‐2014‐1353]; the National Institute on Aging (NIA‐PO1‐AG08761, NIAP01‐AG031719) and from the European Union’s Seventh Framework Programme (FP7/2007–2011) under grant agreement number 259679 and The Danish National Program for Research Infrastructure 2007 (09‐063256).


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