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2019

Absolute Quantitation of Proteins by Acid Hydrolysis Combined with Amino Acid Detection by Mass Spectrometry

Mirgorodskaya, O. A., Körner, R., Kozmin, Y. P. & Roepstorff, P., 2019, Amino Acid Analysis: Methods and Protocols. Humana Press, Bind 2030. s. 11-16 6 s. (Methods in Molecular Biology, Bind 2030).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Hydrolysis
Amino Acids
Acids
Proteins
Peptides
41 Downloads (Pure)

Biochemical and structural characterization of a protein complex containing a hyaluronidase and a CRISP-like protein isolated from the venom of the spider Acanthoscurria natalensis

Barth, T., Mandacaru, S. C., Charneau, S., Souza, M. V. D., Ricart, C. A. O., Noronha, E. F., Souza, A. A., Freitas, S. M. D., Roepstorff, P., Fontes, W., Castro, M. S. & Pires Júnior, O. R., 10. feb. 2019, I : Journal of Proteomics. 192, s. 102-113

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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Spider Venoms
Hyaluronoglucosaminidase
Proteins
Assays
Molecules

Corrigendum to “Biochemical and structural characterization of a protein complex containing a hyaluronidase and a CRISP-like protein isolated from the venom of the spider Acanthoscurria natalensis” [(Journal of Proteomics) (2019) 192 (102–113), (S1874391918303245), (10.1016/j.jprot.2018.08.012)]

Barth, T., Mandacaru, S. C., Charneau, S., de Sousa, M. V., Ricart, C. A. O., Noronha, E. F., Souza, A. A., de Freitas, S. M., Roepstorff, P., Fontes, W., Castro, M. S. & Júnior, O. R. P., 15. apr. 2019, I : Journal of Proteomics. 197, s. 115

Publikation: Bidrag til tidsskriftKommentar/debatForskningpeer review

Spider Venoms
Dolphins
Hyaluronoglucosaminidase
Names
Proteins

Exoproteome profiling of Trypanosoma cruzi during amastigogenesis early stages

Mandacaru, S. C., Queiroz, R. M. L., Alborghetti, M. R., de Oliveira, L. S., de Lima, C. M. R., Bastos, I. M. D., Santana, J. M., Roepstorff, P., Ricart, C. A. O. & Charneau, S., 22. nov. 2019, I : PLOS ONE. 14, 11, 18 s., e0225386.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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Trypanosoma cruzi
Mucins
mucins
trypomastigotes
Proteins
2018
68 Downloads (Pure)

Analysis of the effect of intestinal ischemia and reperfusion on the rat neutrophils proteome

Tahir, M., Arshid, S., Fontes, B., Castro, M. S., Luz, I. S., Botelho, K. L. R., Sidoli, S., Schwämmle, V., Roepstorff, P. & Fontes, W., 29. nov. 2018, I : Frontiers in Molecular Biosciences. 5, s. 1-15 89.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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Proteome
Neutrophils
Workflow
Wounds and Injuries
Enzymes
95 Downloads (Pure)

TMT-based quantitative proteomics analysis reveals airborne PM2.5-induced pulmonary fibrosis

Liu, S., Zhang, W., Zhang, F., Roepstorff, P., Yang, F., Lu, Z. & Ding, W., 31. dec. 2018, I : International Journal of Environmental Research and Public Health. 16, 1, s. 1-14 98.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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Pulmonary Fibrosis
Lung
Proteins
Encyclopedias
Gene Ontology
2017

Analysis of skin derived peptides from the Cuyaba Dwarf Frog Physalaemus nattereri by off-line LC MALDI MS/MS

Castro, M. S., Pires Júnior, O. R., Fontes, W. & Roepstorff, P., 2017, I : International Journal of Mass Spectrometry. 416, s. 90-95 6 s.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Skin
Peptides
Protein Precursors

High performance mass spectrometry based proteomics reveals enzyme and signaling pathway regulation in neutrophils during the early stage of surgical trauma

Arshid, S., Tahir, M., Fontes, B., Montero, E. F. D. S., Castro, M. S., Sidoli, S., Roepstorff, P. & Fontes, W., 2017, I : Proteomics - Clinical Applications. 11, 1-2, 16 s., 1600001.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Mass spectrometry
Neutrophils
Wounds and Injuries
Enzymes
Proteins

Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning

Arshid, S., Tahir, M., Fontes, B., Montero, E. F. S., Castro, M. S., Sidoli, S., Schwämmle, V., Roepstorff, P. & Fontes, W., 2017, I : Journal of Proteomics. 151, s. 162-173

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Molecular Motor Proteins
Ribosomal Proteins
Neutrophils
Proteome
Antioxidants

N-glycan maturation mutants in Lotus japonicus for basic and applied glycoprotein research

Pedersen, C. T., Loke, I., Lorentzen, A., Wolf, S., Kamble, M., Kristensen, S. K., Munch, D., Radutoiu, S., Spillner, E., Roepstorff, P., Thaysen-Andersen, M., Stougaard, J. & Dam, S. S., 2017, I : Plant Journal. 91, 3, s. 394–407

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Lotus corniculatus var. japonicus
glycosylation
Glycosylation
glycoproteins
polysaccharides
77 Downloads (Pure)

Oak protein profile alterations upon root colonization by an ectomycorrhizal fungus

Sebastiana, M., Martins, J., Figueiredo, A., Monteiro, F., Sardans, J., Peñuelas, J., Silva, A., Roepstorff, P., Pais, M. S. & Coelho, A. V., 2017, I : Mycorrhiza. 27, 2, s. 109-128

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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Fil
root colonization
Quercus
fungus
Quercus suber
fungi

Specific adjustments in grapevine leaf proteome discriminating resistant and susceptible grapevine genotypes to Plasmopara viticola

Figueiredo, A., Martins, J., Sebastiana, M., Guerreiro, A., Silva, A., Matos, A. R., Monteiro, F., Pais, M. S., Roepstorff, P. & Coelho, A. V., 2017, I : Journal of Proteomics. 152, s. 48-57

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Proteome
Lipids
Pathogens
Plant Cells
Hydrogen Peroxide
2016
77 Downloads (Pure)

Insight into the exoproteome of the tissue-derived trypomastigote form of trypanosoma cruzi

Queiroz, R. M. L., Ricart, C. A. O., Machado, M. O., Bastos, I. M. D., de Santana, J. M., de Sousa, M. V., Roepstorff, P. & Charneau, S., 2016, I : Frontiers in Chemistry. 4, 10 s., 42.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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Tissue
Proteins
Membrane Glycoproteins
Phosphopeptides
Tissue culture

Revealing the functional structure of a new PLA2 K49 from Bothriopsis taeniata snake venom employing automatic "de novo" sequencing using CID/HCD/ETD MS/MS analyses

Carregari, V. C., Dai, J., Verano-Braga, T., Rocha, T., Ponce-Soto, L. A., Marangoni, S. & Roepstorff, P., 10. jan. 2016, I : Journal of Proteomics. 131, s. 131-139

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Sequence characterization and glycosylation sites identification of donkey milk lactoferrin by multiple enzyme digestions and mass spectrometry

Gallina, S., Cunsolo, V., Saletti, R., Muccilli, V., Di Francesco, A., Foti, S., Lorentzen, A. M. & Roepstorff, P., jul. 2016, I : Amino Acids. 48, 7, s. 1569-1580

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Glycosylation
Lactoferrin
Equidae
Mass spectrometry
Enzymes

Site-specific glycosylation of donkey milk lactoferrin investigated by high-resolution mass spectrometry

Gallina, S., Saletti, R., Cunsolo, V., Muccilli, V., Foti, S., Roepstorff, P. & Rasmussen, M. I., 22. aug. 2016, I : Amino Acids. 48, 12, s. 2799-2808

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Glycosylation
Lactoferrin
Equidae
Mass spectrometry
Polysaccharides
2015

Computational and statistical methods for high-throughput analysis of post-translational modifications of proteins

Schwämmle, V., Braga, T. V. & Roepstorff, P., 2015, I : Journal of Proteomics. 129, s. 3-15

Publikation: Bidrag til tidsskriftReviewForskningpeer review

Cell signaling
Computational methods
Mass spectrometry
Statistical methods
Pipelines
329 Downloads (Pure)

The SNO/SOH TMT strategy for combinatorial analysis of reversible cysteine oxidations

Wojdyla, K., Williamson, J., Roepstorff, P. & Rogowska-Wrzesinska, A., 15. jan. 2015, I : Journal of Proteomics. 113, s. 415-34 20 s.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Fil
Cysteine
Oxidation
Oxidative stress
Fumarates
Proteins