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    Martin Røssel Larsen
2015

Automated N-glycan profiling of a mutant Trypanosoma rangeli sialidase expressed in Pichia pastoris, using tandem mass spectrometry and bioinformatics

Li, H., Rasmussen, M. I., Larsen, M. R., Guo, Y., Jers, C., Palmisano, G., Mikkelsen, J. D. & Kirpekar, F., dec. 2015, I : Glycobiology. 25, 12, s. 1350-1361

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Trypanosoma rangeli
Pichia
Neuraminidase
Bioinformatics
Tandem Mass Spectrometry

Characterization of human neural differentiation from pluripotent stem cells using proteomics/PTMomics: current state-of-the-art and challenges

Braga, M. N. D. M., Meyer, M., Zeng, X. & Larsen, M. R., 2015, I : Proteomics. 15, 4, s. 656-74

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Stem cells
Cytology
Proteins
Neurons
Mass spectrometry

GLYCOSYLATED POLYPEPTIDES ORIGINATING FROM ENTEROTOXIGENIC ESCHERICHIA COLI (ETEC): -

Bidragets oversatte titel: -: -Boysen, A., Møller-Jensen, J., Palmisano, G. & Larsen, M. R., 15. okt. 2015, IPC nr. A61K 39/108 (2006.01), Patentnr. WO/2015/154783, Prioritetsdato 10. apr. 2014, Prioritetsnr. PCT/DK2015/050089

Publikation: Patent

Enterotoxigenic Escherichia coli
Peptides

Important options available - from start to finish -for translating proteomics results to clinical chemistry

Heegaard, N. H. H., Ostergaard, O., Bahl, J. M. C., Overgaard, M., Beck, H. C., Rasmussen, L. M. & Larsen, M. R., 2015, I : Proteomics - Clinical Applications. 9, 1-2, s. 235-252

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Clinical Chemistry
Assays
Stretching
Proteomics
Planning
170 Downloads (Pure)

Optimization of calmodulin-affinity chromatography for brain and organelles

Kulej, K., Sidoli, S., Palmisano, G., Edwards, A. V. G., Robinson, P. J. & Larsen, M. R., 2015, I : EuPA Open Proteonomics. 8, s. 55-67

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95 Downloads (Pure)

Proteotranscriptomic profiling of 231-BR breast cancer cells: Identification of potential biomarkers and therapeutic targets for brain metastasis

Dun, M. D., Chalkley, R. J., Faulkner, S., Keene, S., Avery-Kiejda, K. A., Scott, R. J., Falkenby, L. G., Cairns, M. J., Larsen, M. R., Bradshaw, R. A. & Hondermarck, H., 2015, I : Molecular and Cellular Proteomics. 14, 9, s. 2316-2330

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Quantitative Proteome Analysis Reveals Increased Content of Basement Membrane Proteins in Arteries from Patients with Type 2 Diabetes and Lower Levels among Metformin Users

Rørdam Preil, S., Kristensen, L. P., Beck, H. C., Jensen, P. S., Nielsen, P. S., Steiniche, T., Bjørling-Poulsen, M., Larsen, M. R., Hansen, M. L. & Rasmussen, L. M., 14. sep. 2015, I : Circulation: Cardiovascular Genetics. 8, s. 727-35

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Proteome
Type 2 Diabetes Mellitus
Membrane Proteins
Proteins
Collagen Type II

Quantitative proteomics analysis of platelet-derived microparticles reveals distinct protein signatures when stimulated by different physiological agonists

Milioli, M., Vea, M. I., Sidoli, S., Palmisano, G., Careri, M. & Larsen, M. R., 2015, I : Journal of Proteomics. 121, s. 56-66

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2

Roux, M. E., Rasmussen, M. W., Palma, K., Lolle, S., Regue, A. M., Bethke, G., Glazebrook, J., Zhang, W. P., Sieburth, L., Larsen, M. R., Mundy, J. & Petersen, M., 2015, I : E M B O Journal. 34, 5, s. 593-608

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75 Downloads (Pure)

Unraveling incompatibility between wheat and the fungal pathogen Zymoseptoria tritici through apoplastic proteomics

Yang, F., Li, W., Derbyshire, M., Larsen, M. R., Rudd, J. J. & Palmisano, G., 2015, I : BMC Genomics. 16, 1, 12 s., 368.

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2016
167 Downloads (Pure)

An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer's mouse model

Kempf, S. J., Metaxas, A., Ibáñez-Vea, M., Darvesh, S., Finsen, B. & Larsen, M. R., 7. jun. 2016, I : Oncotarget. 7, 23, s. 33627-33648

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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Olfactory Bulb
Neocortex
Alzheimer Disease
Long-Term Potentiation
Proteome
118 Downloads (Pure)

A novel mass spectrometric strategy "BEMAP" reveals Extensive O-linked protein glycosylation in Enterotoxigenic Escherichia coli

Boysen, A., Palmisano, G., Krogh, T. J., Duggin, I. G., Larsen, M. R. & Møller-Jensen, J., 26. aug. 2016, I : Scientific Reports. 6, 13 s., 32016.

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Enterotoxigenic Escherichia coli
Glycosylation
Proteins
Serine
Oxygen
162 Downloads (Pure)

Chronic low-dose-rate ionising radiation affects the hippocampal phosphoproteome in the ApoE-/- Alzheimer's mouse model

Kempf, S. J., Janik, D., Barjaktarovic, Z., Braga-Tanaka III, I., Tanaka, S., Neff, F., Saran, A., Larsen, M. R. & Tapio, S., 2016, I : OncoTarget. 7, 44, s. 71817-71832

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CRISPR/Cas9-mediated mutation revealed cytoplasmic tail is dispensable for IZUMO1 function and male fertility

Young, S. A. M., Miyata, H., Satouh, Y., Muto, M., Larsen, M. R., Aitken, R. J., Baker, M. A. & Ikawa, M., dec. 2016, I : Reproduction. 152, 6, s. 665-672

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Clustered Regularly Interspaced Short Palindromic Repeats
Mutation
Ovum
Proteins
Nonsense Codon

Detection of proteolytic signatures for Parkinson's disease

Jordal, P. L., Dyrlund, T. F., Winge, K., Larsen, M. R., Danielsen, E. H., Wells, J. A., Otzen, D. E. & Enghild, J. J., 1. feb. 2016, I : Future Neurology. 11, 1, s. 15-32

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Parkinson Disease
Peptides
Cerebrospinal Fluid
Proteins

Glycomic analysis of gastric carcinoma cells discloses glycans as modulators of RON receptor tyrosine kinase activation in cancer

Mereiter, S., Magalhães, A., Adamczyk, B., Jin, C., Almeida, A., Drici, L., Ibáñez-Vea, M., Gomes, C., Ferreira, J. A., Afonso, L. P., Santos, L. L., Larsen, M. R., Kolarich, D., Karlsson, N. G. & Reis, C. A., aug. 2016, I : BBA Reviews on Cancer. 1860, 8, s. 1795-1808

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Neoplasms
Glycosylation
Sialyltransferases
Precision Medicine
Antigen Receptors
132 Downloads (Pure)

Glycomic and sialoproteomic data of gastric carcinoma cells overexpressing ST3GAL4

Mereiter, S., Magalhães, A., Adamczyk, B., Jin, C., Almeida, A., Drici, L., Ibáñez-Vea, M., Larsen, M. R., Kolarich, D., Karlsson, N. G. & Reis, C. A., jun. 2016, I : Data in Brief. 7, s. 814-833

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Research
Neoplasms
Proteins
titanium dioxide
rice bran saccharide

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

Williamson, J. C., Edwards, A. V. G., Verano-Braga, T., Schwämmle, V., Kjeldsen, F., Jensen, O. N. & Larsen, M. R., mar. 2016, I : Proteomics. 16, 6, s. 907-914

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Heat-Shock Response
Mass spectrometers
Proteome
Ions
Isotope Labeling

Improving the Phosphoproteome Coverage for Limited Sample Amounts Using TiO2-SIMAC-HILIC (TiSH) Phosphopeptide Enrichment and Fractionation

Engholm-Keller, K. & Larsen, M. R., 2016, Phospho-Proteomics : Methods and Protocols. Stechow, L. V. (red.). 2. udg. Springer, Bind Part III. s. 161-177 (Methods in Molecular Biology, Bind 1335).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Phosphopeptides
Affinity Chromatography
Liquid Chromatography
Metals
Peptides

Phosphopeptide enrichment by immobilized metal affinity chromatography

Thingholm, T. E. & Larsen, M. R., 2016, Phospho-Proteomics: Methods and Protocols. von Stechow, L. (red.). 2. udg. Humana Press, s. 123-133 (Methods in Molecular Biology, Bind 1355).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Phosphopeptides
Affinity Chromatography
Metals
Peptides
Ions
107 Downloads (Pure)

Proteomic identification of putative microRNA394 target genes in Arabidopsis thaliana identifies major latex protein family members critical for normal development

Litholdo, C. G., Parker, B., Eamens, A. L., Larsen, M. R., Cordwell, S. & Waterhouse, P. M., jun. 2016, I : Molecular and Cellular Proteomics. 15, 6, s. 2033-2047

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Latex
Arabidopsis
Genes
Proteins
MicroRNAs

Sequential elution from IMAC (SIMAC): An efficient method for enrichment and separation of mono-and multi-phosphorylated peptides

Thingholm, T. E. & Larsen, M. R., 2016, Phospho-Proteomics: Methods and Protocols. von Stechow, L. (red.). Humana Press, s. 147-160 (Methods in Molecular Biology, Bind 1355).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Phosphopeptides
Peptides
Affinity Chromatography
Metals
Ions
135 Downloads (Pure)

Simultaneous enrichment of cysteine-containing peptides and phosphopeptides using a cysteine-specific phosphonate adaptable tag (CysPAT) in combination with titanium dioxide (TiO2) chromatography

Huang, H., Pedersen, M. H., Ibañez-Vea, M., Lassen, P. S., Larsen, M. R. & Palmisano, G., 2016, I : Molecular and Cellular Proteomics. 15, 10, s. 3282-3296

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Phosphopeptides
Organophosphonates
Chromatography
Cysteine
Peptides
125 Downloads (Pure)

The arrhythmogenic calmodulin mutation D129G dysregulates cell growth, calmodulin-dependent kinase II activity, and cardiac function in zebrafish

Berchtold, M. W., Zacharias, T., Kulej, K., Wang, K., Torggler, R., Jespersen, T., Chen, J-N., Larsen, M. R. & la Cour, J. M., 23. dec. 2016, I : Journal of Biological Chemistry. 291, 52, s. 26636-26646

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Cell growth
Zebrafish
Calmodulin
Phosphotransferases
Mutation
125 Downloads (Pure)

The Splicing Efficiency of Activating HRAS Mutations Can Determine Costello Syndrome Phenotype and Frequency in Cancer

Hartung, A-M., Swensen, J., Uriz, I. E., Kristjansdottir, K., Petersen, U. S. S., Bang, J. M. V., Guerra, B., Andersen, H. S., Dobrowolski, S. F., Carey, J. C., Yu, P., Vaughn, C., Calhoun, A., Larsen, M. R., Dyrskjøt, L., Stevenson, D. A. & Andresen, B. S., 2016, I : P L o S Genetics. 12, 5, s. e1006039

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Costello Syndrome
exons
phenotype
mutation
cancer

The use of titanium dioxide for selective enrichment of phosphorylated peptides

Thingholm, T. E. & Larsen, M. R., 2016, Phospho-Proteomics: Methods and Protocols. von Stechow, L. (red.). Humana Press, s. 135-146 (Methods in Molecular Biology, Bind 1355).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Phosphopeptides
Peptides
Chromatography
Lactic Acid
titanium dioxide
2017
135 Downloads (Pure)

Alterations in the Cerebral Microvascular Proteome Expression Profile After Transient Global Cerebral Ischemia in Rat

Spray, S., Johansson, S. E., Edwards, A. V. G., Larsen, M. R., Radziwon-Balicka, A., Povlsen, G. K. & Edvinsson, L., 2017, I : Journal of Molecular Neuroscience. 61, 3, s. 396–411

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Transient Ischemic Attack
Proteome
Proteins
Cell Respiration
Clathrin

Characterization of the phosphoproteome and sialoproteome in brain tissues by mass spectrometry

Ibáñez-Vea, M., Kempf, S. J. & Larsen, M. R., 2017, Current Proteomic Approaches Applied to Brain Function. Santamaría, E. & Fernández-Irigoyen, J. (red.). Humana Press, s. 191-206 (Neuromethods, Bind 127).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Mass spectrometry
Brain
Tissue
Proteins
Glycopeptides

Comprehensive glycoprofiling of the epimastigote and trypomastigote stages of Trypanosoma cruzi

Alves, M. J. M., Kawahara, R., Viner, R., Colli, W., Mattos, E. C., Thaysen-Andersen, M., Larsen, M. R. & Palmisano, G., 16. jan. 2017, I : Journal of Proteomics. 151, s. 182-192

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Trypanosoma cruzi
Glycoproteins
Glycopeptides
Glycosylation
Life cycle
185 Downloads (Pure)

Convergent Akt activation drives acquired EGFR inhibitor resistance in lung cancer

Jacobsen, K., Bertran-Alamillo, J., Molina, M. A., Teixidó, C., Karachaliou, N., Pedersen, M. H., Castellví, J., Garzón, M., Codony-Servat, C., Codony-Servat, J., Giménez-Capitán, A., Drozdowskyj, A., Viteri, S., Larsen, M. R., Lassen, U., Felip, E., Bivona, T. G., Ditzel, H. J. & Rosell, R., 1. dec. 2017, I : Nature Communications. 8, 14 s., 410.

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Epidermal Growth Factor Receptor
lungs
inhibitors
cancer
Chemical activation

Elucidation of altered pathways in tumor-initiating cells of triple-negative breast cancer: A useful cell model system for drug screening

Christensen, A. G., Ehmsen, S., Terp, M. G., Batra, R., Alcaraz, N., Baumbach, J., Noer, J. B., Moreira, J. M. A., Leth-Larsen, R., Larsen, M. R. & Ditzel, H. J., aug. 2017, I : Stem Cells. 35, 8, s. 1898–1912

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Neoplasms
Apoptosis
Apoptosis Regulatory Proteins
Interleukin-2
Organism Cloning

GLYCOSYLATED YGHJ POLYPEPTIDES FROM ENTEROTOXIGENIC ESCHERICHIA COLI (ETEC)

Boysen, A., Møller-Jensen, J., Palmisano, G. & Larsen, M. R., 13. apr. 2017, Patentnr. WO2017059864 (A1), 13. apr. 2017, Prioritetsdato 6. okt. 2015, Prioritetsnr. EP20150188608

Publikation: Patent

Enterotoxigenic Escherichia coli
Peptides

"Highly increased expression of astrocytic cytokine in neocortex of Alzheimer’s patients investigated by proteomics"

Thygesen, C., Kempf, S., Metaxas, A., Darvesh, S., Larsen, M. R. & Finsen, B., 2017.

Publikation: Konferencebidrag uden forlag/tidsskriftPosterForskningpeer review

Novel DNA coding regions and protein arginylation reveal unexplored T. cruzi proteome and PTMs

de Oliveira, G. S., Kawahara, R., Rosa-Fernandes, L., Avila, C. C., Larsen, M. R., Pereira Alves, J. M. & Palmisano, G., 2017, I : International Journal of Mass Spectrometry. 418, s. 51-66

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Pulse time modulation
Proteome
DNA
Proteins
Mass spectrometry
125 Downloads (Pure)

Proteomic Expression Changes in Large Cerebral Arteries After Experimental Subarachnoid Hemorrhage in Rat Are Regulated by the MEK-ERK1/2 Pathway

Müller, A. H., Edwards, A. V. G., Larsen, M. R., Nielsen, J., Warfvinge, K., Povlsen, G. K. & Edvinsson, L., 2017, I : Journal of Molecular Neuroscience. 62, 3-4, s. 380-394

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MAP Kinase Signaling System
Proteins
Intracranial Pressure
Tandem Mass Spectrometry
Messenger RNA
305 Downloads (Pure)

TNFα affects CREB-mediated neuroprotective signaling pathways of synaptic plasticity in neurons as revealed by proteomics and phospho-proteomics

Jensen, P., Myhre, C. L., Lassen, P., Metaxas, A., Khan, A. M., Lambertsen, K. L., Babcock, A., Finsen, B., Larsen, M. R. & Kempf, S., 2017, I : OncoTarget. 8, 36, s. 60223-60242

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Neurons
Alzheimer Disease
Small Interfering RNA
Proteins
Pathology

Understanding Alzheimer's disease by global quantification of protein phosphorylation and sialylated N-linked glycosylation profiles: A chance for new biomarkers in neuroproteomics?

Lassen, P. S., Thygesen, C., Larsen, M. R. & Kempf, S. J., 2017, I : Journal of Proteomics. 161, May, s. 11-25

Publikation: Bidrag til tidsskriftReviewForskningpeer review

Glycosylation
Phosphorylation
Biomarkers
Brain
Alzheimer Disease
2018

Affinity proteomics for interactome and phosphoproteome screening in synaptosomes

Engholm-Keller, K., Bache, N., Rao, S. R., Wark, J. R., Larsen, M. R., Robinson, P. J. & Graham, M. E., sep. 2018, Synaptosomes. M. Murphy, K. (red.). Humana Press, Bind 141. s. 165-191 (Neuromethods, Bind 141).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Proteins
Isotope Labeling
Peptides
Computational Biology
Proteolysis

Age-Dependent Changes in the Sarkosyl-Insoluble Proteome of APPSWE/PS1ΔE9 Transgenic Mice Implicate Dysfunctional Mitochondria in the Pathogenesis of Alzheimer's Disease

Thygesen, C., Metaxas, A., Larsen, M. R. & Finsen, B., 1. jan. 2018, I : Journal of Alzheimer's disease : JAD. 64, 4, s. 1247-1259

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Proteome
Alzheimer Disease
Proteins
tau Proteins
Oxidative Phosphorylation
210 Downloads (Pure)

A Targeted LC-MS Strategy for Low-Abundant HLA Class-I-Presented Peptide Detection Identifies Novel Human Papillomavirus T-Cell Epitopes

Blatnik, R., Mohan, N., Bonsack, M., Falkenby, L. G., Hoppe, S., Josef, K., Steinbach, A., Becker, S., Nadler, W. M., Rucevic, M., Larsen, M. R., Salek, M. & Riemer, A. B., jun. 2018, I : Proteomics. 18, 11, 9 s., 1700390.

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T-Lymphocyte Epitopes
HLA Antigens
Peptides
Epitopes
Assays
102 Downloads (Pure)

Author Correction: Snake Venom Extracellular vesicles (SVEVs) reveal wide molecular and functional proteome diversity

Carregari, V. C., Rosa-Fernandes, L., Baldasso, P., Bydlowski, S. P., Marangoni, S., Larsen, M. R. & Palmisano, G., 23. okt. 2018, I : Scientific Reports. 8, 1 s., 15908.

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Proteome
104 Downloads (Pure)

Characterization of Macrophage Endogenous S-Nitrosoproteome Using a Cysteine-Specific Phosphonate Adaptable Tag in Combination with TiO2 Chromatography

Ibáñez-Vea, M., Huang, H., Martínez De Morentin, X., Pérez, E., Gato, M., Zuazo, M., Arasanz, H., Fernández-Irigoyen, J., Santamaría, E., Fernandez-Hinojal, G., Larsen, M. R., Escors, D. & Kochan, G., 2018, I : Journal of Proteome Research. 17, 3, s. 1172-1182

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Organophosphonates
Macrophages
Chromatography
Cysteine
Protein S
115 Downloads (Pure)
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Insulin
Glucose
Islets of Langerhans
Cell Communication
Proteomics

Characterizing disease-associated changes in post-translational modifications by mass spectrometry

Thygesen, C., Boll, I., Finsen, B., Modzel, M. & Larsen, M. R., 2018, I : Expert Review of Proteomics. 15, 3, s. 245-258

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Mass spectrometry
Biomarkers
Peptide Library
Body fluids
Medicine

Development of a Neo-Epitope Specific Assay for Serological Assessment of Type VII Collagen Turnover and Its Relevance in Fibroproliferative Disorders

Sand, J. M. B., Lamy, P., Juhl, P., Siebuhr, A. S., Iversen, L. V., Nawrocki, A., Larsen, M. R., Domsic, R. T., Franchimont, N., Chavez, J., Karsdal, M. A. & Leeming, D. J., 2018, I : ASSAY and Drug Development Technologies. 16, 2, s. 123-131

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Collagen Type VII
Systemic Scleroderma
Chronic Obstructive Pulmonary Disease
Serum
Epidermolysis Bullosa Dystrophica
124 Downloads (Pure)

Development of a Trypanosoma cruzi strain typing assay using MS2 peptide spectral libraries (Tc-STAMS2)

de Oliveira, G. S., Kawahara, R., Rosa-Fernandes, L., Mule, S. N., Avila, C. C., Teixeira, M. M. G., Larsen, M. R. & Palmisano, G., 2018, I : PLOS Neglected Tropical Diseases . 12, 4, e0006351.

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Peptide Library
Trypanosoma cruzi
Firearms
Peptides
Libraries
119 Downloads (Pure)

Distinct urinary glycoprotein signatures in prostate cancer patients

Kawahara, R., Ortega, F., Rosa-Fernandes, L., Guimarães, V., Quina, D., Nahas, W., Schwämmle, V., Srougi, M., Leite, K. R. M., Thaysen-Andersen, M., Larsen, M. R. & Palmisano, G., 4. sep. 2018, I : Oncotarget. 9, 69, s. 33077-33097

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Prostatic Neoplasms
Prostatic Hyperplasia
Glycosylation
Liquid Chromatography
Urine
157 Downloads (Pure)

Diverse protein profiles in CNS myeloid cells and CNS tissue from lipopolysaccharide- and vehicle-injected APPSWE/PS1ΔE9 transgenic mice implicate cathepsin Z in alzheimer’s disease

Thygesen, C., Ilkjær, L., Kempf, S. J., Hemdrup, A. L., von Linstow, C. U., Babcock, A. A., Darvesh, S., Larsen, M. R. & Finsen, B., nov. 2018, I : Frontiers in cellular neuroscience. 12, 21 s., 397.

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Cathepsin Z
Myeloid Cells
Alzheimer Disease
Microglia
Proteins
104 Downloads (Pure)

Dynamic Changes in the Protein Localization in the Nuclear Environment in Pancreatic β-Cell after Brief Glucose Stimulation

Kang, T., Jensen, P., Solovyeva, V., Brewer, J. R. & Larsen, M. R., 6. apr. 2018, I : Journal of Proteome Research. 17, 4, s. 1664–1676

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Nuclear Pore
Glucose
Insulin
Proteins
Transcription