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Udgivelsessår

  • 2020
  • 2017
  • 2016

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  • Daniel Merkle
2020

Combining Graph Transformations and Semigroups for Isotopic Labeling Design

Andersen, J. L., Merkle, D. & Rasmussen, P. S., feb. 2020, I : Journal of Computational Biology. 27, 2, s. 269-287 19 s.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

2016

A Software Package for Chemically Inspired Graph Transformation

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2016, Graph Transformation: Proceedings of the 9th International Conference on Graph Transformation. Echahed, R. & Minas, M. (red.). Springer, s. 73-88 (Lecture Notes in Computer Science, Bind 9761).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

Automatic Inference of Graph Transformation Rules Using the Cyclic Nature of Chemical Reactions

Flamm, C., Merkle, D., Stadler, P. F. & Thorsen, U., 2016, Graph Transformation: Proceedings of the 9th International Conference on Graph Transformation. Echahed, R. & Minas, M. (red.). Springer, s. 206-222 (Lecture Notes in Computer Science, Bind 9761).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

2017

DNA-Templated Synthesis Optimization

Hansen, B. N., Larsen, K. S., Merkle, D. & Mihalchuk, A., 2017, 23rd International Conference on DNA Computing and Molecular Programming. Springer, s. 17-32 (Lecture Notes in Computer Science, Bind 10467).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

Forbidden time travel: Characterization of time-consistent tree reconciliation maps

Nøjgaard, N., Geiß, M., Merkle, D., Stadler, P. F., Wieseke, N. & Hellmuth, M., 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schwartz, R. & Reinert, K. (red.). Dagstuhl: Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 17. (Leibniz International Proceedings in Informatics, Bind 88).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

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An intermediate level of abstraction for computational systems chemistry

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2017, I : Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 375, 2109, 20160354.

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2020

A Generic Framework for Engineering Graph Canonization Algorithms

Andersen, J. L. & Merkle, D., apr. 2020, I : A C M Journal of Experimental Algorithmics. 25, 1, 1.2.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

2017

Chemical Graph Transformation with Stereo-Information

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2017, Graph Transformation: 10th International Conference, ICGT 2017, Held as Part of STAF 2017, Marburg, Germany, July 18-19, 2017, Proceedings: Proceedings of the 10th International Conference on Graph Transformation. de Lara, J. & Plump, D. (red.). Cham: Springer, s. 54-69 (Lecture Notes in Computer Science, Bind 10373).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

2020

A graph-based tool to embed the π-calculus into a computational DPO framework

Andersen, J. L., Hellmuth, M., Merkle, D., Nøjgaard, N. & Peressotti, M., 8. mar. 2020, I : CEUR Workshop Proceedings. 2568, s. 121-132

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