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  • 2020
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  • Daniel Merkle
2017

Chemical Graph Transformation with Stereo-Information

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2017, Graph Transformation: 10th International Conference, ICGT 2017, Held as Part of STAF 2017, Marburg, Germany, July 18-19, 2017, Proceedings: Proceedings of the 10th International Conference on Graph Transformation. de Lara, J. & Plump, D. (red.). Cham: Springer, s. 54-69 (Lecture Notes in Computer Science, Bind 10373).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

2019

Information Processing in Chemical Systems

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2019, The Energetics of Computing in Life and Machines. Wolpert, D. H., Kempes, C., Stadler, P. F. & Grochow, J. A. (red.). SFI Press

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

2017

DNA-Templated Synthesis Optimization

Hansen, B. N., Larsen, K. S., Merkle, D. & Mihalchuk, A., 2017, 23rd International Conference on DNA Computing and Molecular Programming. Springer, s. 17-32 (Lecture Notes in Computer Science, Bind 10467).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

2016

A Software Package for Chemically Inspired Graph Transformation

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2016, Graph Transformation: Proceedings of the 9th International Conference on Graph Transformation. Echahed, R. & Minas, M. (red.). Springer, s. 73-88 (Lecture Notes in Computer Science, Bind 9761).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

2017

An intermediate level of abstraction for computational systems chemistry

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2017, I : Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 375, 2109, 20160354.

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2016

Automatic Inference of Graph Transformation Rules Using the Cyclic Nature of Chemical Reactions

Flamm, C., Merkle, D., Stadler, P. F. & Thorsen, U., 2016, Graph Transformation: Proceedings of the 9th International Conference on Graph Transformation. Echahed, R. & Minas, M. (red.). Springer, s. 206-222 (Lecture Notes in Computer Science, Bind 9761).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

2020

Combining Graph Transformations and Semigroups for Isotopic Labeling Design

Andersen, J. L., Merkle, D. & Rasmussen, P. S., 2020, I : Journal of Computational Biology. 27, 2, s. 269-287 19 s.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

2019

Graph Transformations, Semigroups, and Isotopic Labeling

Andersen, J. L., Merkle, D. & Rasmussen, P. S., 2019, Bioinformatics Research and Applications. ISBRA 2019. Cai, Z., Skums, P. & Li, M. (red.). Springer, s. 196-207 (Lecture Notes in Computer Science, Bind 11490).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

2020

A Graph-Based Tool to Embed the pi-Calculus into a Computational DPO Framework

Andersen, J. L., Hellmuth, M., Merkle, D., Nøjgaard, N. & Peressotti, M., 2020, Proceedings of the SOFSEM 2020 Doctoral Student Research. ceur workshop proceedings, Bind 2568. s. 121-132 12 s. (CEUR Workshop Proceedings).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingKonferencebidrag i proceedingsForskningpeer review

A graph-based tool to embed the π-calculus into a computational DPO framework

Andersen, J. L., Hellmuth, M., Merkle, D., Nøjgaard, N. & Peressotti, M., 1. jan. 2020, I : CEUR Workshop Proceedings. 2568, s. 121-132 12 s.

Publikation: Bidrag til tidsskriftKonferenceartikelForskningpeer review

2019

Chemical transformation motifs: modelling pathways as integer hyperflows

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 1. mar. 2019, I : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 2, s. 510-523

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

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149 Downloads (Pure)
2017

Forbidden time travel: Characterization of time-consistent tree reconciliation maps

Nøjgaard, N., Geiß, M., Merkle, D., Stadler, P. F., Wieseke, N. & Hellmuth, M., 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schwartz, R. & Reinert, K. (red.). Dagstuhl: Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 17. (Leibniz International Proceedings in Informatics, Bind 88).

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