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Publikationer

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Tidsskriftartikel
2020

DDI2 Is a Ubiquitin-Directed Endoprotease Responsible for Cleavage of Transcription Factor NRF1

Dirac-Svejstrup, A. B., Walker, J., Faull, P., Encheva, V., Akimov, V., Puglia, M., Perkins, D., Kümper, S., Hunjan, S. S., Blagoev, B., Snijders, A. P., Powell, D. J. & Svejstrup, J. Q., 9. jun. 2020, I : Molecular Cell. 79, 2, s. 332-341.e7

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Kappa- opioid receptor regulates human sperm functions via SPANX-A/D protein family

Urizar-Arenaza, I., Osinalde, N., Akimov, V., Puglia, M., Muñoa-Hoyos, I., Gómez-Giménez, B., Gianzo, M., Ganzabal, T., Blagoev, B., Kratchmarova, I. & Subiran, N., 16. jun. 2020, I : Reproductive Biology.

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Phosphoproteomic profiling reveals a defined genetic program for osteoblastic lineage commitment of human bone marrow-derived stromal stem cells

Barrio-Hernandez, I., Jafari, A., Rigbolt, K. T. G., Hallenborg, P., Sanchez-Quiles, V., Skovrind, I., Akimov, V., Kratchmarova, I., Dengjel, J., Kassem, M. & Blagoev, B., jan. 2020, I : Genome Research. 30, 1, s. 127-137 11 s.

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SPANX-A/D protein subfamily plays a key role in nuclear organisation, metabolism and flagellar motility of human spermatozoa

Urizar-Arenaza, I., Osinalde, N., Akimov, V., Puglia, M., Muñoa-Hoyos, I., Gianzo, M., Rodriguez, J. A., Ganzabal, T., Blagoev, B., Kratchmarova, I. & Subiran, N., 27. mar. 2020, I : Scientific Reports. 10, 9 s., 5625.

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31 Downloads (Pure)
2019

NADH dehydrogenase complex I is overexpressed in incipient metastatic murine colon cancer cells

Marquez, J., Kratchmarova, I., Akimov, V., Unda, F., Ibarretxe, G., Clerigué, A. S., Osinalde, N. & Badiola, I., 1. feb. 2019, I : Oncology Reports. 41, 2, s. 742-752

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133 Downloads (Pure)

Phosphoproteomic and functional analyses reveal sperm-specific protein changes downstream of kappa opioid receptor in human spermatozoa

Urizar-Arenaza, I., Osinalde, N., Akimov, V., Puglia, M., Candenas, L., Pinto, F. M., Muñoa-Hoyos, I., Gianzo, M., Matorras, R., Irazusta, J., Blagoev, B., Subiran, N. & Kratchmarova, I., 15. mar. 2019, I : Molecular and Cellular Proteomics. 18, Suppl 1, s. S118-S131

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229 Downloads (Pure)
2018

Data on mass spectrometry-based proteomics for studying the involvement of CYLD in the ubiquitination events downstream of EGFR activation

Sanchez-Quiles, V., Osinalde, N., Akimov, V., Kratchmarova, I. & Blagoev, B., 1. jun. 2018, I : Data in Brief. 18, s. 1856-1863

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164 Downloads (Pure)

StUbEx PLUS-A Modified Stable Tagged Ubiquitin Exchange System for Peptide Level Purification and In-Depth Mapping of Ubiquitination Sites

Akimov, V., Olsen, L. C. B., Hansen, S. V. F., Barrio-Hernandez, I., Puglia, M., Jensen, S. S., Solov'yov, I. A., Kratchmarova, I. & Blagoev, B., 2018, I : Journal of Proteome Research. 17, 1, s. 296-304

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UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites

Akimov, V., Barrio-Hernandez, I., Hansen, S. V. F., Hallenborg, P., Pedersen, A-K., Bekker-Jensen, D. B., Puglia, M., Christensen, S. D. K., Vanselow, J. T., Nielsen, M. M., Kratchmarova, I., Kelstrup, C. D., Olsen, J. V. & Blagoev, B., 2018, I : Nature Structural and Molecular Biology. 25, 7, s. 631-640

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2017

Characterization of receptor-associated protein complex assembly in interleukin (IL)-2- and IL-15-activated T-cell lines

Osinalde, N., Sánchez-Quiles, V., Akimov, V., Aloria, K., Arizmendi, J. M., Blagoev, B. & Kratchmarova, I., 6. jan. 2017, I : Journal of Proteome Research. 16, 1, s. 106-121

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Cylindromatosis Tumor Suppressor Protein (CYLD) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor

Sanchez-Quiles, V., Akimov, V., Osinalde, N., Francavilla, C., Puglia, M., Barrio-Hernandez, I., Kratchmarova, I., Olsen, J. V. & Blagoev, B., 2017, I : Molecular and Cellular Proteomics. 16, 8, s. 1433-1446 14 s.

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162 Downloads (Pure)
2016

Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes

Osinalde, N., Mitxelena, J., Sánchez-Quiles, V., Akimov, V., Aloria, K., Arizmendi, J. M., Zubiaga, A. M., Blagoev, B. & Kratchmarova, I., jun. 2016, I : Molecular and Cellular Proteomics. 15, 6, s. 2076-92 17 s.

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221 Downloads (Pure)
2015

SILAC-based quantification of changes in protein tyrosine phosphorylation induced by Interleukin-2 (IL-2) and IL-15 in T-lymphocytes

Osinalde, N., Sánchez-Quiles, V., Akimov, V., Blagoev, B. & Kratchmarova, I., dec. 2015, I : Data in Brief. 5, s. 53-58

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157 Downloads (Pure)

Simultaneous dissection and comparison of IL-2 and IL-15 signaling pathways by global quantitative phosphoproteomics

Osinalde, N., Sánchez-Quiles, V., Akimov, V., Guerra, B., Blagoev, B. & Kratchmarova, I., 2015, I : Proteomics. 15, 2-3, s. 520-31

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2014

Phosphorylation site dynamics of early T-cell receptor signaling

Chylek, L. A., Akimov, V., Dengjel, J., Rigbolt, K. T. G., Hu, B., Hlavacek, W. S. & Blagoev, B., 2014, I : PLOS ONE. 9, 8, s. e104240

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StUbEx: Stable Tagged Ubiquitin Exchange System for the Global Investigation of Cellular Ubiquitination

Akimov, V., Henningsen, J., Hallenborg, P., Rigbolt, K. T. G., Jensen, S. S., Nielsen, M. M., Kratchmarova, I. & Blagoev, B., 2014, I : Journal of Proteome Research. 13, 9, s. 4192-4204

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2013

JMJD1C demethylates MDC1 to regulate the RNF8 and BRCA1-mediated chromatin response to DNA breaks

Watanabe, S., Watanabe, K., Akimov, V., Bartkova, J., Blagoev, B., Lukas, J. & Bartek, J., 2013, I : Nature Structural and Molecular Biology. 20, 12, s. 1425-33

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The Chromatin Scaffold Protein SAFB1 Renders Chromatin Permissive for DNA Damage Signaling

Altmeyer, M. F., Toledo, L., Gudjonsson, T., Grøfte, M., Rask, M-B., Lukas, C., Akimov, V., Blagoev, B., Bartek, J. & Lukas, J., 2013, I : Molecular Cell. 52, 2, s. 206-220

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2012

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens

Dengjel, J., Høyer-Hansen, M., Nielsen, M., Eisenberg, T., Harder, L. M., Schandorff, S., Farkas, T., Kirkegaard, T., Becker, A. C., Schroeder, S., Vanselow, K., Lundberg, E., Nielsen, M. M., Kristensen, A. R., Akimov, V., Bunkenborg, J., Madeo, F., Jäättelä, M. & Andersen, J. S., 2012, I : Molecular and Cellular Proteomics. 11, 3, s. M111.014035

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Mdm2 controls CREB-dependent transactivation and initiation of adipocyte differentiation

Hallenborg, P., Feddersen, S., Francoz, S., Murano, I., Sundekilde, U., Petersen, R. K., Akimov, V., Olson, M. V., Lozano, G., Cinti, S., Gjertsen, B. T., Madsen, L., Marine, J-C., Blagoev, B. & Kristiansen, K., 2012, I : Cell Death and Differentiation. 19, 8, s. 1381-9 9 s.

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2011

Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics

Akimov, V., Rigbolt, K. T. G., Nielsen, M. M. & Blagoev, B., 1. dec. 2011, I : Molecular BioSystems. 7, 12, s. 3223-33 11 s.

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System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

Rigbolt, K. T. G., Prokhorova, T. A., Akimov, V., Henningsen, J., Johansen, P. T., Kratchmarova, I., Kassem, M., Mann, M., Olsen, J. V. & Blagoev, B., 2011, I : Science Signaling. 4, 164, s. rs3

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