Publikationer 1994 2019

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Tidsskriftartikel
2016
127 Downloads (Pure)

Molecular dynamics for irradiation driven chemistry: application to the FEBID process

Sushko, G. B., Solov'yov, I. A. & Solov'yov, A. V., 2016, I : European Physical Journal D. Atomic, Molecular, Optical and Plasma Physics. 70, s. 217-231

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Molecular dynamics
Irradiation
chemistry
molecular dynamics
irradiation
113 Downloads (Pure)

Multiscale description of avian migration: from chemical compass to behaviour modeling

Pedersen, J. B., Nielsen, C. & Solov'yov, I., 10. nov. 2016, I : Scientific Reports. 6, s. 1-12 12 s., 36709.

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106 Downloads (Pure)

Neutrino masses and ordering via multimessenger astronomy

Langæble, K., Meroni, A. & Sannino, F., 28. sep. 2016, I : Physical Review D. Particles and fields. 94, 5, s. 1-8 053013.

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astronomy
neutrinos
detectors
astrophysics
gravitons
83 Downloads (Pure)

Nonperturbative renormalization of the axial current in Nf=3 lattice QCD with Wilson fermions and tree-level improved gauge action

Bulava, J., Della Morte, M., Heitger, J. & Wittemeier, C., 20. jun. 2016, I : Physical Review D. Particles and fields. 93, 11, s. 1-7 114513.

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Optimization and modeling of the remote loading of luciferin into liposomes

Hansen, A. H., Lomholt, M. A., Hansen, P. L., Mouritsen, O. G. & Arouri, A., 2016, I : International Journal of Pharmaceutics. 508, 1-2, s. 128-134

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140 Downloads (Pure)

Perillyl alcohol: Dynamic interactions with the lipid bilayer and implications for long‐term inhalational chemotherapy for gliomas

Orlando da Fonseca, C., Khandelia, H., D’Alincourt Salazar, M., Schönthal, A. H., Meireles, O. C. & Quirico‑Santos, T., 5. jan. 2016, I : Surgical Neurology International. 7, 1

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perilla alcohol
Lipid Bilayers
Glioma
Cell Membrane
Lipids
50 Downloads (Pure)

PetriScape: A plugin for discrete Petri net simulations in Cytoscape

Almeida, D., Azevedo, V., Silva, A. & Baumbach, J., 2016, I : Journal of Integrative Bioinformatics. 13, 1, 6 s., 284.

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Systems Biology
Computational Biology
Datasets

Potential of BODIPY-cholesterol for analysis of cholesterol transport and diffusion in living cells

Wüstner, D., Lund, F. W., Röhrl, C. & Stangl, H., 2016, I : Chemistry and Physics of Lipids. 194, s. 12-28

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Cholesterol
Cells
Fluorescence
Sterols
Cell membranes

Quantifying the Relationship Between Curvature and Electric Potential in Lipid Bilayers

Bruhn, D. S., Lomholt, M. A. & Khandelia, H., 2016, I : The Journal of Physical Chemistry Part B. 120, 21, s. 4812-4817

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Lipid bilayers
lipids
curvature
membranes
Membranes
45 Downloads (Pure)

Quantum Critical Behaviour of Semisimple Gauge Theories

Kamuk Esbensen, J., Ryttov, T. A. & Sannino, F., 2016, I : Physical Review D (Particles, Fields, Gravitation and Cosmology). 93, 4, s. 1-13 045009.

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gauge theory
phase diagrams
trajectories
walking
safety
90 Downloads (Pure)

Record Dynamics in the Parking Lot Model

Sibani, P. & Boettcher, S., 12. mar. 2016, I : Physical Review E. 93, 8 s., 062141.

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Robust and Bias-Corrected Estimation of the Probability of Extreme Failure Sets

Dutang, C., Goegebeur, Y. & Guillou, A., 2016, I : Sankhya. Series A. 78, 1, s. 52-86

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130 Downloads (Pure)

Robust de novo pathway enrichment with KeyPathwayMiner 5

Alcaraz, N., List, M., Dissing-Hansen, M., Rehmsmeier, M., Tan, Q., Mollenhauer, J., Ditzel, H. & Baumbach, J., 2016, I : F1000Research. 2016, 5, 10 s., 1531.

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Perturbation techniques
Systems Biology
Computational Biology
Gold
Genes
32 Downloads (Pure)

Scheme-Independent Calculation of $γ_{\barψψ,IR}$ for an SU(3) Gauge Theory

Ryttov, T. A. & Shrock, R., 2016, I : Physical Review D. Particles and fields. 94, 10, s. 1-5 105014.

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76 Downloads (Pure)

Scheme-Independent Series Expansions at an Infrared Zero of the Beta Function in Asymptotically Free Gauge Theories

Ryttov, T. A. & Shrock, R., 2016, I : Physical Review D. Particles and fields. 94, 12, s. 1-25 125005.

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Simulations of full multivariate Tweedie with flexible dependence structure

Cuenin, J., Jørgensen, B. & Kokonendji, C. C., 2016, I : Computational Statistics. 31, 4, s. 1477-1492

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110 Downloads (Pure)

Spatial distribution and activity of Na +/K +-ATPase in lipid bilayer membranes with phase boundaries

Bidragets oversatte titel: Den rumlige fordeling og aktivitet af Na +/K +-ATPase i lipid dobbeltlag med fasegrænsefladerBhartia, T., Cornelius, F., Brewer, J. R., Bagatolli, L., Simonsen, A. C., Ipsen, J. H. & Mouritsen, O. G., 2016, I : BBA Biomembranes. 1858, 6, s. 1390-1399

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Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation

Husen, P. & Solov'yov, I. A., 4. aug. 2016, I : American Chemical Society. Journal. 138, 37, s. 12150-12158

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Molecular oxygen
Superoxides
Oxygen
Proteins
Membranes
131 Downloads (Pure)

Studying chemical reactions in biological systems with MBN Explorer: Implementation of molecular mechanics with dynamical topology

Sushko, G. B., Solov'yov, I. A., Verkhovtsev, A. V., Volkov, S. N. & Solov'Yov, A. V., 2016, I : European Physical Journal D. Atomic, Molecular, Optical and Plasma Physics. 70, 1, 12.

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Molecular mechanics
Biological systems
field theory (physics)
Chemical reactions
chemical reactions
172 Downloads (Pure)

SU(2) Gauge Theory with Two Fundamental Flavours: a Minimal Template for Model Building

Arthur, R., Drach, V., Hansen, M., Hietanen, A., Pica, C. & Sannino, F., 29. nov. 2016, I : Physical Review D. Particles and fields. 94, 9, s. 1-17 094507.

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gauge theory
templates
dark matter
MOM (semiconductors)
composite materials
163 Downloads (Pure)

The Tangled Nature Model of evolutionary dynamics reconsidered: structural and dynamical effects of trait inheritance

Andersen, C. W. & Sibani, P., 2016, I : Physical Review E. 93, 6 s., 052410.

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Thickness Estimation of the Subcutaneous Fat Using Coaxial Probe

Ramezani, M. H. & S. Nadimi, E., 2016, I : Healthcare Technology Letters. 3, 1, s. 85-91

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114 Downloads (Pure)

Tuning of the Na,K-ATPase by the beta subunit

Hilbers, F., Kopec, W., Isaksen, T. J., Holm, T. H., Lykke-Hartmann, K., Nissen, P., Khandelia, H. & Poulsen, H., 2016, I : Scientific Reports. 6, 11 s., 20442.

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Molecular Dynamics Simulation
Mammals
Protein Isoforms
Hydrolysis
Cell Membrane
114 Downloads (Pure)

Vacuum stability of asymptotically safe gauge-Yukawa theories

Litim, D. F., Mojaza, M. & Sannino, F., 14. jan. 2016, I : The Journal of High Energy Physics (Online). 2016, 81, s. 1-22 81.

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vacuum
crossovers
phase diagrams
ground state
energy

Wind Turbine Performance Analysis based on Multivariate Higher Order Moments and Bayesian Classifiers

Herp, J., Pedersen, N. L. & S. Nadimi, E., 2016, I : Control Engineering Practice. 49, s. 204-211

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2017

A local moment type estimator for an extreme quantile in regression with random covariates

Goegebeur, Y., Guillou, A. & Osmann, M., 2017, I : Communications in Statistics: Theory and Methods. 46, 1, s. 319-343

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46 Downloads (Pure)

An averaged polarizable potential for multiscale modeling in phospholipid membranes

Witzke, S., List, N. H., Olsen, J. M. H., Steinmann, C., Petersen, M., Beerepoot, M. T. P. & Kongsted, J., 2017, I : Journal of Computational Chemistry. 38, 9, s. 601-611

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Multiscale Modeling
Phospholipids
Lipids
Membrane
Charge
139 Downloads (Pure)

A novel role for methyl cysteinate, a cysteine derivative, in cesium accumulation in Arabidopsis thaliana

Adams, E., Miyazaki, T., Hayaishi-Satoh, A., Han, M., Kusano, M., Khandelia, H., Saito, K. & Shin, R., 2017, I : Scientific Reports. 7, 43170.

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Cesium
Arabidopsis
Metals
Plant Cells
Metabolic Networks and Pathways
122 Downloads (Pure)

A quantum-mechanical perspective on linear response theory within polarizable embedding

List, N. H., Norman, P., Kongsted, J. & Jensen, H. J. A., 2017, I : Journal of Chemical Physics. 146, 23, 15 s., 234101.

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embedding
Large scale systems
Poles
composite materials
molecular properties
134 Downloads (Pure)

Ascorbic acid may not be involved in cryptochrome-based magnetoreception

Nielsen, C., Kattnig, D. R., Sjulstok, E., Hore, P. J. & Solov'yov, I. A., 2017, I : Journal of the Royal Society. Interface. 14, 137, 10 s., 20170657.

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Cryptochromes
Ascorbic acid
Flavin-Adenine Dinucleotide
Ascorbic Acid
Tryptophan

Assessing frequency-dependent site polarisabilities in linear response polarisable embedding

Nørby, M. S., Vahtras, O., Norman, P. & Kongsted, J., 2017, I : Molecular Physics. 115, 1-2, s. 39-47

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Mechanics
embedding
Quantum theory
Absorption spectra
molecular properties
88 Downloads (Pure)

Asymptotically safe and free chiral theories with and without scalars

Mølgaard, E. & Sannino, F., 2017, I : Physical Review D (Particles, Fields, Gravitation and Cosmology). 96, 5, 15 s., 056004.

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scalars
gauge theory
perturbation theory
degrees of freedom
phase diagrams
Chemical shift
Shielding
embedding
Density functional theory
shielding

Bias-corrected and robust estimation of the bivariate stable tail dependence function

Escobar-Bach, M., Goegebeur, Y., Guillou, A. & You, A., 2017, I : Test. 26, 2, s. 284-307

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inorganic peroxides
Electron Transport Complex III
cytochromes
Superoxides
Charge transfer
93 Downloads (Pure)

Cheap arbitrary high order methods for single integrand SDEs

Debrabant, K. & Kværnø, A., 2017, I : Bit (Lisse). 57, 1, s. 153-168

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High-order Methods
Integrand
Arbitrary
B-series
Runge Kutta methods

Computational approach to evaluation of optical properties of membrane probes

Nåbo, L. J., List, N. H., Svendsen, C. S. & Kongsted, J., 2017, I : Journal of Chemical Theory and Computation. 13, 2, s. 719–726

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Optical properties
membranes
Membranes
Gases
optical properties
216 Downloads (Pure)

Computational reconstruction reveals a candidate magnetic biocompass to be likely irrelevant for magnetoreception

Friis, I., Sjulstok, E. & Solov'yov, I. A., 2017, I : Scientific Reports. 7, 12 s., 13908.

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Iron
Molecular Dynamics Simulation
Drosophila melanogaster
Electrons
Proteins
105 Downloads (Pure)

Conformal Phase Diagram of Complete Asymptotically Free Theories

Pica, C., Ryttov, T. A. & Sannino, F., 2017, I : Physical Review D. Particles and fields. 96, 7, 14 s., 074015.

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phase diagrams
scalars
trajectories
coefficients
95 Downloads (Pure)

Data for the size of cholesterol-fat micelles as a function of bile salt concentration and the physico-chemical properties of six liquid experimental pine-derived phytosterol formulations in a cholesterol-containing artificial intestine fluid

Yi, J., Knudsen, T. A., Nielsen, A. L., Duelund, L., Christensen, M., Hervella, P., Needham, D. & Mouritsen, O. G., 2017, I : Data in Brief. 10, s. 478-481

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151 Downloads (Pure)

Decision Making on Fitness Landscapes

Arthur, R. & Sibani, P., 2017, I : Physica A: Statistical Mechanics and its Applications. 471, s. 696–704

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Drug repurposing by integrated literature mining and drug–gene–disease triangulation

Sun, P., Guo, J., Winnenburg, R. & Baumbach, J., 2017, I : Drug Discovery Today. 22, 4, s. 615-619

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Information Storage and Retrieval
Semantics
Pharmaceutical Preparations

Efficient detection of differentially methylated regions using DiMmeR

Almeida, D. M., Uhrenfeldt Skov, I., Silva, A., Vandin, F., Tan, Q., Röttger, R. & Baumbach, J., 15. feb. 2017, I : Bioinformatics. 33, 4, s. 549-551

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Programming Languages
Cytosine
Random Allocation
Computational Biology
Libraries

Electrostatic Stabilization Plays a Central Role in Autoinhibitory Regulation of the Na+,K+-ATPase

Jiang, Q., Garcia, A., Han, M., Cornelius, F., Apell, H. J., Khandelia, H. & Clarke, R. J., 2017, I : Biophysical Journal. 112, 2, s. 288-299

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Static Electricity
Enzymes
Physiological Phenomena
Membranes
Protein Subunits

Elucidation of altered pathways in tumor-initiating cells of triple-negative breast cancer: A useful cell model system for drug screening

Christensen, A. G., Ehmsen, S., Terp, M. G., Batra, R., Alcaraz, N., Baumbach, J., Noer, J. B., Moreira, J. M. A., Leth-Larsen, R., Larsen, M. R. & Ditzel, H. J., 2017, I : Stem Cells. 35, 8, s. 1898–1912

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Neoplasms
Apoptosis
Apoptosis Regulatory Proteins
Organism Cloning
Cell Survival
137 Downloads (Pure)

Entropy in the Tangled Nature Model of evolution

Roach, T. N. F., Nulton, J., Sibani, P., Rohwer, F. & Salamon, P., 2017, I : Entropy. 19, 5, 12 s., 192.

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entropy
ecosystems
ecology
data simulation
configurations
170 Downloads (Pure)

Extending Chiral Perturbation Theory with an Isosinglet Scalar

Hansen, M., Langaeble, K. & Sannino, F., 2017, I : Physical Review D (Particles, Fields, Gravitation and Cosmology). 95, 3, 11 s., 036005.

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perturbation theory
scalars
phenomenology
broken symmetry
pions
133 Downloads (Pure)

Flavour anomalies after the RK∗ measurement

D’Amico, G., Nardecchia, M., Panci, P., Sannino, F., Strumia, A., Torre, R. & Urbano, A., 2017, I : Journal of High Energy Physics. 2017, 9, 32 s., 10.

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chirality
anomalies
leptons
quarks
deviation
107 Downloads (Pure)

Framework for an asymptotically safe standard model via dynamical breaking

Abel, S. & Sannino, F., 2017, I : Physical Review D (Particles, Fields, Gravitation and Cosmology). 96, 5, 10 s., 055021.

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embedding
broken symmetry
color
symmetry