Publikationer 1994 2020

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Tidsskriftartikel
2012

High-throughput single-microparticle imaging flow analyzer

Goda, K., Ayazi, A., Gossett, D. R., Sadasivam, J., Lonappan, C. K., Sollier, E., Fard, A. M., Hur, S. C., Adam, J., Murray, C., Wang, C., Brackbill, N., Di Carlo, D. & Jalali, B., 17. jul. 2012, I : Proceedings of the National Academy of Sciences of the United States of America. 109, 29, s. 11630-11635 6 s.

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Optical Imaging
Microscopy

Hybrid dispersion laser scanner

Goda, K., Mahjoubfar, A., Wang, C., Fard, A., Adam, J., Gossett, D. R., Ayazi, A., Sollier, E., Malik, O., Chen, E., Liu, Y., Brown, R., Sarkhosh, N., Di Carlo, D. & Jalali, B., 14. jun. 2012, I : Scientific Reports. 2, 445.

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Flow Cytometry
Research

Improved interpolating fields for hadrons at non-vanishing momentum

Morte, M. D., Jäger, B., Rae, T. D. & Wittig, H., 6. nov. 2012, I : Proceedings of Science.

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Improved interpolating fields for hadrons at non-zero momentum

Morte, M. D., Jaeger, B., Rae, T. & Wittig, H., 1. aug. 2012, I : The European Physical Journal A: Hadrons and Nuclei.

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Lattice calculations of the leading hadronic contribution to (g-2)_mu

Morte, M. D., Jäger, B., Jüttner, A. & Wittig, H., 6. nov. 2012, I : P o S - Proceedings of Science.

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Parameters of Heavy Quark Effective Theory from Nf=2 lattice QCD

Blossier, B., Morte, M. D., Fritzsch, P., Garron, N., Heitger, J., Simma, H., Sommer, R. & Tantalo, N., 29. mar. 2012, I : JHEP.

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The nucleon axial charge from lattice QCD with controlled errors

Capitani, S., Morte, M. D., Hippel, G. V., Jäger, B., Jüttner, A., Knippschild, B., Meyer, H. B. & Wittig, H., 1. maj 2012, I : Physical Review D. Particles and fields.

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2013

A comparison of single particle tracking and temporal image correlation spectroscopy for quantitative analysis of endosome motility

Lund, F. W. & Wustner, D., 2013, I : Journal of Microscopy. 252, 2, s. 169-188

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Noise
Signal-To-Noise Ratio
Lighting
Fibroblasts
Fluorescence

BiCluE - Exact and heuristic algorithms for weighted bi-cluster editing of biomedical data

Sun, P., Guo, J. & Baumbach, J., 20. dec. 2013, I : B M C Proceedings. 7, Suppl 7, s. S9

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Heuristic algorithms
Software packages
Explosions
Genome-Wide Association Study
Cluster Analysis

Conformations of double-headed, triple-tailed phospholipid oxidation lipid products in model membranes

Hermetter, A., Kopec, W. & Khandelia, H., aug. 2013, I : BBA General Subjects. 1828, 8, s. 1700-6 7 s.

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Phospholipids
Lipids
Membranes
Schiff Bases
Lipid Bilayers

Dielectric-loaded plasmonic waveguide components: Going practical

Kumar, A., Gosciniak, J., Volkov, V. S., Papaioannou, S., Kalavrouziotis, D., Vyrsokinos, K., Weeber, J-C., Hassan, K., Markey, L., Dereux, A., Tekin, T., Waldow, M., Apostolopoulos, D., Avramopoulos, H., Pleros, N. & Bozhevolnyi, S. I., 1. jan. 2013, I : Laser & Photonics Reviews.

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Mature Epitope Density - A strategy for target selection based on immunoinformatics and exported prokaryotic proteins

Santos, A. R., Pereira, V. B., Barbosa, E., Baumbach, J., Pauling, J., Röttger, R., Turk, M. Z., Silva, A., Miyoshi, A. & Azevedo, V., 2013, I : BMC Genomics. 14, suppl. 6, s. 1-11 11 s., S4.

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Proteins
Mycobacterium tuberculosis
Computational Biology
Virulence
Reading

Membrane orientation and lateral diffusion of BODIPY-cholesterol as a function of probe structure

Solanko, L. M., Wüstner, D., Lund, F. W., Brewer, J. R., Midtiby, H., Bittman, R., Eggeling, C., Honigmann, A. & Dekaris, V., 5. nov. 2013, I : Biophysical Journal. 105, 9, s. 2082-2092 10 s.

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Cholesterol
Membranes
Cell membranes
Fluorophores
4,4-difluoro-4-bora-3a,4a-diaza-s-indacene

Molecular dynamics simulations of the interactions of medicinal plant extracts and drugs with lipid bilayer membranes

Kopec, W., Telenius, J. & Khandelia, H., jun. 2013, I : F E B S Journal. 280, 12, s. 2785-805 21 s.

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Lipid Bilayers
Molecular Dynamics Simulation
Medicinal Plants
Membranes
Pharmaceutical Preparations

Peak Detection Method Evaluation for Ion Mobility Spectrometry by Using Machine Learning Approaches

Hauschild, A-C., Kopczynski, D., D'Addario, M., Baumbach, J. I., Rahmann, S. & Baumbach, J., 2013, I : Metabolites. 3, 2, s. 277-293 17 s.

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Spectrometry
Learning systems
Ions
Volatile Organic Compounds
Biomarkers

Spectrally encoded angular light scattering

Adam, J., Mahjoubfar, A., Diebold, E. D., Buckley, B. W. & Jalali, B., 2013, I : Optics Express.

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Tension moderation and fluctuation spectrum in simulated lipid membranes under an applied electric potential

Loubet, B., Lomholt, M. A. & Khandelia, H., 2013, I : Journal of Chemical Physics. 139, 16, s. 164902

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Membrane Lipids
lipids
Rigidity
membranes
rigidity

Tunable elastomer-based virtually imaged phased array

Metz, P., Block, H., Behnke, C., Krantz, M., Gerken, M. & Adam, J., 11. feb. 2013, I : Optics Express. 21, 3, s. 3324-3335 12 s.

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phased arrays
elastomers
tuning
optical resonators
Joule heating
2014

Accelerating all-atom MD simulations of lipids using a modified virtual-sites technique

Loubet, B., Kopec, W. & Khandelia, H., 9. dec. 2014, I : Journal of Chemical Theory and Computation. 10, 12, s. 5690-5695

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Lipid bilayers
Lipids
lipids
Atoms
Membrane Lipids

Ageing single file motion

Metzler, R., Sanders, L., Lomholt, M. A., Lizana, L., Fogelmark, K. & Ambjornsson, T., 2014, I : European Physical Journal. Special Topics. 223, 14, s. 3287-3293

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A Highly Viscous Imidazolium Ionic Liquid inside Carbon Nanotubes

Ohba, T. & Chaban, V. V., 2014, I : Journal of Physical Chemistry B. 118, 23, s. 6234-6240 7 s.

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A local moment type estimator for the extreme value index in regression with random covariates

Goegebeur, Y., Guillou, A. & Osmann, M., 2014, I : Canadian Journal of Statistics. 42, 3, s. 487-507

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169 Downloads (Pure)

Asymptotic safety guaranteed

Litim, D. F. & Sannino, F., dec. 2014, I : Journal of High Energy Physics (Online). 2014, 178.

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Fil
safety
perturbation theory
fermions
scalars

Atomistic Force Field for Pyridinium-Based Ionic Liquids: Reliable Transport Properties

Bidragets oversatte titel: Atomistic Force Field for Pyridinium-Based Ionic Liquids: Reliable Transport PropertiesVoroshylova, I. V. & Chaban, V. V., 2014, I : Journal of Physical Chemistry B. 118, 36, s. 10716-10724

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Atomistic Monte Carlo simulation of lipid membranes

Wüstner, D. & Sklenar, H., 24. jan. 2014, I : International Journal of Molecular Sciences. 15, 2, s. 1767-803 37 s., ijms15021767.

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Åben adgang
lipids
membranes
Monte Carlo method
simulation
closures

BacillusRegNet: a transcriptional regulation database and analysis platform for Bacillus species

Misirli, G., Hallinan, J., Röttger, R., Baumbach, J. & Wipat, A., 2014, I : Journal of Integrative Bioinformatics. 11, 2, s. 244

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Databases
Data Curation
Datasets

Baryon spectrum with Nƒ=2+1+1 twisted mass fermions

Alexandrou, C., Drach, V., Jansen, K., Kallidonis, C. & Koutsou, G., 2014, I : Physical Review D (Particles, Fields, Gravitation and Cosmology). 90, 7, 29 s., 074501.

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Basis Set Error Estimation for DFT Calculations of Electronic g-Tensors for Transition Metal Complexes

Pedersen, M. N., Hedegård, E. D. & Kongsted, J., 2014, I : Journal of Computational Chemistry. 35, 25, s. 1809-1814 6 s.

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Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering

Sun, P., Speicher, N. K., Röttger, R., Guo, J. & Baumbach, J., 2014, I : Nucleic Acids Research. 42, 9, s. e78

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Cluster Analysis
Gene Ontology
Explosions
Computational Biology
Research

Binding Free Energy Based Structural Dynamics Analysis of HIV-1 RT RNase H-Inhibitor Complexes

Poongavanam, V., Olsen, J. M. H. & Kongsted, J., 2014, I : Integrative Biology. 6, s. 1010-1022

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Chelation-induced quenching of two-photon absorption properties of azacrown ether substituted distyryl benzen for magnesium ion sensing

Murugan, N. A., Zalesny, ., Kongsted, J. & Ågren, H., 2014, I : Journal of Chemical Theory and Computation. 10, 2, s. 778-788

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Chronic exposure to odorous chemicals in residential areas and effects on human psychosocial health: Dose-response relationships

Blanes-Vidal, V., Bælum, J., S. Nadimi, E., Løfstrøm, P. & Christensen, L. P., 2014, I : Science of the Total Environment. 490, s. 545-554 10 s.

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Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data

List, M., Hauschild, A-C., Tan, Q., Kruse, T. A., Mollenhauer, J., Baumbach, J. & Batra, R., jun. 2014, I : Journal of Integrative Bioinformatics. 11, 2, s. 236

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DNA Methylation
Epigenomics
Gene Expression Profiling
Databases
127 Downloads (Pure)

Composite (Goldstone) Higgs Dynamics on the Lattice: Spectrum of SU(2) Gauge Theory with two Fundamental Fermions

Arthur, R., Drach, V., Hansen, M. R. L., Hietanen, A., Lewis, R., Pica, C. & Sannino, F., 23. dec. 2014, I : P o S - Proceedings of Science. 6 s., 249.

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Åben adgang
Fil
gauge theory
mesons
fermions
scalars
composite materials

Computational assigment of redox states to Coulomb blockade diamonds

Olsen, S. T., Arciasauskaite, V., Hansen, T., Kongsted, J. & Mikkelsen, K. V., 2014, I : Physical Chemistry Chemical Physics. 16, s. 17473

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Computational Integrative Biology--on the joint analysis of diverse biological data sets

Baumbach, J. & Röttger, R., 2014, I : Integrative Biology. 6, 11, s. 1008-9

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Computationally efficient prediction of area per lipid

Chaban, V. V., 2014, I : Chemical Physics Letters. 616-617, s. 25-29

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Computationally Efficient Prediction of Ionic Liquid Properties

Chaban, V. V. & Prezhdo, O. V., 2014, I : The Journal of Physical Chemistry Letters. 5, 11, s. 1973-1977

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Conformal Behavior at Four Loops and Scheme (In)Dependence

Bidragets oversatte titel: Conformal Behavior at Four Loops and Scheme (In)DependenceRyttov, T., 25. sep. 2014, I : Physical Review D (Particles, Fields, Gravitation and Cosmology). 056007 .

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155 Downloads (Pure)

Conformal Extensions of the Standard Model with Veltman Conditions

Antipin, O., Mojaza, M. & Sannino, F., 7. apr. 2014, I : Physical Review D (Particles, Fields, Gravitation and Cosmology). 89, April, 085015.

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Fil
scalars
bosons

Current breathomics-a review on data pre-processing techniques and machine learning in metabolomics breath analysis

Smolinska, A., Hauschild, A. C., Fijten, R. R. R., Dallinga, J. W., Baumbach, J. & van Schooten, F. J., 2014, I : Journal of Breath Research. 8, 2, s. 20

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Decay constants of B-mesons from non-perturbative HQET with two light dynamical quarks

Bernardoni, F., Blossier, B., Bulava, J., Della Morte, M., Fritzsch, P., Garron, N., Gérardin, A., Heitger, J., von Hippel, G., Simma, H. & Sommer, R., 2014, I : Physics Letters B: Particle Physics, Nuclear Physics and Cosmology. 735, s. 349-356

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mesons
quarks
decay
pions
systematic errors

Dehydroergosterol as an analogue for cholesterol: Why it mimics cholesterol so well?

Pourmosa, M., Rog, T., Mikkeli, R., Vattulaien, I., Solanko, L. M., Wüstner, D., List, N. H., Kongsted, J. & Karttunen, M., 2014, I : Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 118, s. 7345

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Distribution of neutral lipids in the lipid droplet core

Chaban, V. V. & Khandelia, H., 25. sep. 2014, I : Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 118, 38, s. 11145-51 7 s.

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Lipids
lipids
Triolein
Cholesterol Esters
esters

Does the Like Dissolves Like Rule Hold for Fullerene and Ionic Liquids?

Chaban, V. V., Maciel, C. & Fileti, E. E., 2014, I : Journal of Solution Chemistry. 43, 6, s. 1019-1031

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Dual Mechanism of HIV-1 Integrase and RNase H Inhibition by Diketo Derivatives – A Computational Study

Poongavanam, V., Moorthy, NSH. & Kongsted, J., 11. aug. 2014, I : R S C Advances. 4, s. 38672-38681

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Efficient 3D Kinetic Monte Carlo Method for Modeling of Molecular Structure and Dynamics

Panshenskov, M., Solov'yov, I. & Solov'yov, A. V., 2014, I : Journal of Computational Chemistry. 35, s. 1317-1329 13 s.

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Kinetic Monte Carlo
Self-assembly
Self-organization
Monte Carlo method
Self assembly

Efficient Sample Tracking With OpenLabFramework

List, M., Schmidt, S., Trojnar, J., Thomas, J., Thomassen, M., Kruse, T. A., Tan, Q., Baumbach, J. & Mollenhauer, J., mar. 2014, I : Scientific Reports. 4, 4278.

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Clinical Laboratory Information Systems
Information Management
Libraries
Biomedical Research
Clone Cells

Elucidation of epithelial-mesenchymal transition-related pathways in a triple-negative breast cancer cell line model by multi-omics interactome analysis

Pauling, J. K., Christensen, A. G., Batra, R., Alcaraz, N., Barbosa, E., Larsen, M. R., Beck, H. C., Leth-Larsen, R., Azevedo, V., Ditzel, H. J. & Baumbach, J., 15. aug. 2014, I : Integrative Biology. 6, 11, s. 1058-1068

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Cells
Phosphorylation
Cell Line
Zyxin
Proteins