Institut for Biokemi og Molekylær Biologi

  • Campusvej 55

    5230 Odense M

Publikationer 1971 2019

2019

Absolute Quantitation of Proteins by Acid Hydrolysis Combined with Amino Acid Detection by Mass Spectrometry

Mirgorodskaya, O. A., Körner, R., Kozmin, Y. P. & Roepstorff, P., 2019, Amino Acid Analysis: Methods and Protocols. Humana Press, Bind 2030. s. 11-16 6 s. (Methods in Molecular Biology, Bind 2030).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Hydrolysis
Amino Acids
Acids
Proteins
Peptides
68 Downloads (Pure)

Accelerated redevelopment of vocal skills is preceded by lasting reorganization of the song motor circuitry

Vellema, M., Diales Rocha, M., Bascones, S., Zsebők, S., Dreier, J., Leitner, S., Van der Linden, A., Brewer, J. & Gahr, M., 17. maj 2019, I : eLife. 8, 26 s., e43194.

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Motor Skills
Music
Motor Cortex
Birds
Testosterone

A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation

Wong, J. E. M. M., Nadzieja, M., Madsen, L. H., Bücherl, C. A., Dam, S., Sandal, N. N., Couto, D., Derbyshire, P., Uldum-Berentsen, M., Schroeder, S., Schwämmle, V., Nogueira, F. C. S., Asmussen, M. H., Thirup, S., Radutoiu, S., Blaise, M., Andersen, K. R., Menke, F. L. H., Zipfel, C. & Stougaard, J., 25. jun. 2019, I : Proceedings of the National Academy of Sciences of the United States of America. 116, 28, s. 14339-14348 10 s.

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Cytoplasmic and Nuclear Receptors
Fabaceae
Loteae
Proteins
Nitrogen
23 Downloads (Pure)

Analysis of protein chlorination by mass spectrometry

Nybo, T., Davies, M. J. & Rogowska-Wrzesinska, A., 1. sep. 2019, I : Redox Biology. 26, 10 s., 101236.

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Chlorination
Mass spectrometry
Laminin
Proteins
Network protocols

Angiotensin-(1-7) oral treatment after experimental myocardial infarction leads to downregulation of CXCR4

Gómez-Mendoza, D. P., Marques, F. D., Melo-Braga, M. N., Sprenger, R. R., Sinisterra, R. D., Kjeldsen, F., Santos, R. A. & Verano-Braga, T., 30. sep. 2019, I : Journal of Proteomics. 208, 11 s., 103486.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

CXC Chemokines
Chemokine Receptors
Angiotensins
Down-Regulation
angiotensin I (1-7)

An IgY-based immunoassay to evaluate the biomarker potential of the Tannerella forsythia virulence factor karilysin in human saliva

Skottrup, P. D., López, R., Ksiazek, M., Højrup, P., Baelum, V., Potempa, J. & Kaczmarek, J. Z., jun. 2019, I : Journal of Immunological Methods. 469, s. 26-32

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Saliva
Immunoassay
Periodontitis
Point-of-Care Systems
Surface Plasmon Resonance

Annexin A7 is required for ESCRT III-mediated plasma membrane repair

Sønder, S. L., Boye, T. L., Tölle, R., Dengjel, J., Maeda, K., Jäättelä, M., Simonsen, A. C., Jaiswal, J. K. & Nylandsted, J., 1. dec. 2019, I : Scientific Reports. 9, 1, 6726.

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Annexin A7
Endosomal Sorting Complexes Required for Transport
Cell Membrane
Apoptosis
Eukaryotic Cells
7 Downloads (Pure)

A novel network user behaviors and profile testing based on anomaly detection techniques

Tahir, M., Li, M., Zheng, X., Carie, A., Jin, X., Azhar, M., Ayoub, N., Wagan, A., Aamir, M., Jamali, L. A., Imran, M. A. & Hulio, Z. H., 2019, I : International Journal of Advanced Computer Science and Applications. 10, 6, s. 305-324 20 s.

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Testing
Security of data
Computer networks
Support vector machines
Classifiers
45 Downloads (Pure)

A pathogenic haplotype, common in Europeans, causes autosomal recessive albinism and uncovers missing heritability in OCA1

Grønskov, K., Jespersgaard, C., Bruun, G. H., Harris, P., Brøndum-Nielsen, K., Andresen, B. S. & Rosenberg, T., 24. jan. 2019, I : Scientific Reports. 9, 1, 7 s., 645.

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Haplotypes
Ocular Albinism
Piebaldism
Low Vision
Virulence

Assessment of protein extraction and digestion efficiency of well-established shotgun protocols for heart proteomics

Rodrigues-Ribeiro, L., Melo-Braga, M. N., Kjeldsen, F., Gómez-Mendoza, D. P. & Verano-Braga, T., 1. aug. 2019, I : Analytical Biochemistry. 578, s. 51-59

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Firearms
Proteolysis
Proteins
Buffers
Tissue

A sub-chronic Xysmalobium undulatum hepatotoxicity investigation in HepG2/C3A spheroid cultures compared to an in vivo model

Calitz, C., Hamman, J. H., Fey, S. J., Viljoen, A. M., Gouws, C. & Wrzesinski, K., 15. jul. 2019, I : Journal of Ethnopharmacology. 239, 8 s., 111897.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Valproic Acid
Liver
Sprague Dawley Rats
Adenylate Kinase
Herbal Medicine

Athlete narratives of sexual harassment and abuse in the field of sport

Bisgaard, K. & Støckel, J. T., 2019, I : Journal of Clinical Sport Psychology. 13, 2, s. 226-242

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Sexual Harassment
Athletes
Grooming
Interviews
Adipogenesis
Stem Cell Factor
Osteogenesis
Color

Autoantibodies as diagnostic tools

Houen, G., 1. jan. 2019, Autoantibodies: Methods and Protocols. Houen, G. (red.). Humana Press, Bind 1901. s. 1-11 (Methods in Molecular Biology, Bind 1901).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

41 Downloads (Pure)

Automated workflow composition in mass spectrometry-based proteomics

Palmblad, M., Lamprecht, A-L., Ison, J. & Schwämmle, V., 15. feb. 2019, I : Bioinformatics (Oxford, England). 35, 4, s. 656–664

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Workflow
Computational Biology
Research Personnel
Benchmarking
Semantics

Autophagy-Mediated Cholesterol Trafficking Controls Steroid Production

Texada, M. J., Malita, A., Christensen, C. F., Dall, K. B., Faergeman, N. J., Nagy, S., Halberg, K. A. & Rewitz, K., 11. mar. 2019, I : Developmental Cell. 48, 5, s. 659-671.e4

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Steroids
Cholesterol
Steroid hormones
Nutrients
Growth and Development

Axon-Dependent Patterning and Maintenance of Somatosensory Dendritic Arbors

Ramirez-Suarez, N. J., Belalcazar, H. M., Salazar, C. J., Beyaz, B., Raja, B., Nguyen, K. C. Q., Celestrin, K., Fredens, J., Færgeman, N. J., Hall, D. H. & Bülow, H. E., 28. jan. 2019, I : Developmental Cell. 48, 2, s. 229-244.e4

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

Dendrites
Maintenance
Physical vapor deposition
Neurons
Neural Cell Adhesion Molecule L1

Binding and intracellular transport of 25-hydroxycholesterol by Niemann-Pick C2 protein

Petersen, D., Reinholdt, P., Szomek, M., Hansen, S. K., Poongavanam, V., Juhl, A. D., Heegaard, C. W., Krishnan, K., Fujiwara, H., Covey, D. F., Ory, D. S., Kongsted, J. & Wüstner, D., 2019, I : B B A - Biomembranes.

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15 Downloads (Pure)

Biochemical and structural characterization of a protein complex containing a hyaluronidase and a CRISP-like protein isolated from the venom of the spider Acanthoscurria natalensis

Barth, T., Mandacaru, S. C., Charneau, S., Souza, M. V. D., Ricart, C. A. O., Noronha, E. F., Souza, A. A., Freitas, S. M. D., Roepstorff, P., Fontes, W., Castro, M. S. & Pires Júnior, O. R., 10. feb. 2019, I : Journal of Proteomics. 192, s. 102-113

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Spider Venoms
Hyaluronoglucosaminidase
Proteins
Assays
Molecules

CFP suppresses breast cancer cell growth by TES-mediated upregulation of the transcription factor DDIT3

Block, I., Müller, C., Sdogati, D., Pedersen, H., List, M., Jaskot, A. M., Syse, S. D., Lund Hansen, P., Schmidt, S., Christiansen, H., Casella, C., Bering Olsen, S., Blomstrøm, M. M., Riedel, A., Thomassen, M., Kruse, T. A., Karlskov Hansen, S. W., Kioschis, P. & Mollenhauer, J., 6. jun. 2019, I : Oncogene. 38, 23, s. 4560-4573

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Properdin
Up-Regulation
Growth
Neoplasms
Mutation
64 Downloads (Pure)

Chlorination and oxidation of the extracellular matrix protein laminin and basement membrane extracts by hypochlorous acid and myeloperoxidase

Nybo, T., Dieterich, S., Gamon, L. F., Chuang, C. Y., Hammer, A., Hoefler, G., Malle, E., Rogowska-Wrzesinska, A. & Davies, M. J., 1. jan. 2019, I : Redox Biology. 20, s. 496-513

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Hypochlorous Acid
Extracellular Matrix Proteins
Chlorination
Laminin
Peroxidase
45 Downloads (Pure)

CoExpresso: Assess the quantitative behavior of protein complexes in human cells

Chalabi, M. H., Tsiamis, V., Käll, L., Vandin, F. & Schwämmle, V., 9. jan. 2019, I : BMC Bioinformatics. 20, 1, s. 1-10 17.

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Cells
Proteins
Protein
Cell
Scoring
55 Downloads (Pure)

Collagen density regulates the activity of tumor-infiltrating T cells

Kuczek, D. E., Larsen, A. M. H., Thorseth, M-L., Carretta, M., Kalvisa, A., Siersbæk, M. S., Simões, A. M. C., Roslind, A., Engelholm, L. H., Noessner, E., Donia, M., Svane, I. M., Straten, P. T., Grøntved, L. & Madsen, D. H., 12. mar. 2019, I : Journal for immunotherapy of cancer. 7, 1, 15 s., 68.

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Neoplasms
Cell Proliferation
Gene Expression Profiling
Autocrine Communication
CD4-CD8 Ratio

Combination of Cannabidiol and Bacitracin Against Resistant Bacteria

Wassmann, C. S., 7. jul. 2019.

Publikation: Konferencebidrag uden forlag/tidsskriftKonferenceabstrakt til konferenceForskningpeer review

Combination of Cannabidiol and Bacitracion against Resistant Bacteria

Wassmann, C. S., 8. jul. 2019.

Publikation: Konferencebidrag uden forlag/tidsskriftPosterForskning

43 Downloads (Pure)

Comparative analysis of sequencing technologies for single-cell transcriptomics

Natarajan, K. N., Miao, Z., Jiang, M., Huang, X., Zhou, H., Xie, J., Wang, C., Qin, S., Zhao, Z., Wu, L., Yang, N., Li, B., Hou, Y., Liu, S. & Teichmann, S. A., 2019, I : Genome Biology. 20, 8 s., 70.

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Small Cytoplasmic RNA
transcriptomics
Libraries
RNA
DNA libraries
Proteins
T-cells
Tissue
Chromatin Assembly and Disassembly
Proteomics

Computational Characterization of a Cholesterol-Based Molecular Rotor in Lipid Membranes

Reinholdt, P., Wind, S., Wüstner, D. & Kongsted, J., 2019, I : Journal of Physical Chemistry B. 123, s. 7313-7326 14 s.

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Cholesterol
cholesterol
Membrane Lipids
rotors
lipids

Corrigendum to “Biochemical and structural characterization of a protein complex containing a hyaluronidase and a CRISP-like protein isolated from the venom of the spider Acanthoscurria natalensis” [(Journal of Proteomics) (2019) 192 (102–113), (S1874391918303245), (10.1016/j.jprot.2018.08.012)]

Barth, T., Mandacaru, S. C., Charneau, S., de Sousa, M. V., Ricart, C. A. O., Noronha, E. F., Souza, A. A., de Freitas, S. M., Roepstorff, P., Fontes, W., Castro, M. S. & Júnior, O. R. P., 15. apr. 2019, I : Journal of Proteomics. 197, s. 115

Publikation: Bidrag til tidsskriftKommentar/debatForskningpeer review

Spider Venoms
Dolphins
Hyaluronoglucosaminidase
Names
Proteins

Cross-correlation analysis to quantify relative spatial distributions of fat and protein in super-resolution microscopy images of dairy gels

Glover, Z. J., Bisgaard, A. H., Andersen, U., Povey, M. J., Brewer, J. R. & Simonsen, A. C., dec. 2019, I : Food Hydrocolloids. 97, 11 s., 105225.

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Dairies
Oils and fats
Spatial distribution
Microscopy
microscopy

Delivery of proteins encapsulated in chitosan-tripolyphosphate nanoparticles to human skin melanoma cells

Stie, M. B., Thoke, H. S., Issinger, O-G., Hochscherf, J., Guerra, B. & Olsen, L. F., feb. 2019, I : Colloids and Surfaces B: Biointerfaces. 174, s. 216-223

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Chitosan
Bovine Serum Albumin
Melanoma
delivery
Skin

Determination of autoantibodies by line immunoblotting

Sternbæk, L., Friis, T. & Houen, G., 1. jan. 2019, Autoantibodies: Methods and Protocols. Houen, G. (red.). Humana Press, Bind 1901. s. 255-262 (Methods in Molecular Biology, Bind 1901).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Immunoblotting
Research Personnel
Membranes

Determination of rheumatoid factors by ELISA

Trier, N. H. & Houen, G., 1. jan. 2019, Autoantibodies: Methods and Protocols. Houen, G. (red.). Humana Press, Bind 1901. s. 263-270 (Methods in Molecular Biology, Bind 1901).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Rheumatoid Factor
Immunoassay
False Positive Reactions
Serum

Did evolution create a flexible ligand-binding cavity in the urokinase receptor through deletion of a plesiotypic disulfide bond?

Leth, J. M., Mertens, H. D. T., Leth-Espensen, K. Z., Jørgensen, T. J. D. & Ploug, M., 3. maj 2019, I : Journal of Biological Chemistry. 294, 18, s. 7403-7418

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Urokinase-Type Plasminogen Activator
Disulfides
Ligands
Cysteine
Snake Venoms

Differential Ion Mobility Separations/Mass Spectrometry with High Resolution in Both Dimensions

Baird, M. A., Anderson, G. A., Shliaha, P. V., Jensen, O. N. & Shvartsburg, A. A., 15. jan. 2019, I : Analytical Chemistry. 91, 2, s. 1479-1485 7 s.

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Pulse time modulation
Ultrahigh vacuum
Mass spectrometers
Isomers
Histones

DirectMS1: MS/MS-free identification of 1000 proteins of cellular proteomes in 5 minutes

Ivanov, M. V., Bubis, J. A., Gorshkov, V., Tarasova, I. A., Levitsky, L. I., Lobas, A. A., Solovyeva, E. M., Pridatchenko, M. L., Kjeldsen, F. & Gorshkov, M. V., 5. sep. 2019

Publikation: AndetAndet bidragForskning

Direct observation of nuclear receptor dynamics by single molecule tracking and imaging of intrinsically fluorescent ligands

Wüstner, D., 2019.

Publikation: Konferencebidrag uden forlag/tidsskriftPosterForskningpeer review

22 Downloads (Pure)

DNA repair in plant mitochondria - A complete base excision repair pathway in potato tuber mitochondria

Ferrando, B., de Matos Furlanetto, A. L. D., Gredilla, R., Havelund, J. F., Hebelstrup, K. H., Møller, I. M. & Stevnsner, T., jun. 2019, I : Physiologia Plantarum. 166, 2, s. 494-512

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DNA repair
tubers
mitochondria
potatoes
oxidative stress

Down-regulation of CK2α correlates with decreased expression levels of DNA replication minichromosome maintenance protein complex (MCM) genes

Schaefer, S., Doktor, T. K., Frederiksen, S. B., Chea, K., Hlavacova, M., Bruun, G. H., Rabjerg, M., Andresen, B. S., Dominguez, I. & Guerra, B., 2019, I : Scientific Reports. 9

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48 Downloads (Pure)

Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake Cadagno

Luedin, S. M., Liechti, N., Cox, R. P., Danza, F., Frigaard, N-U., Posth, N. R., Pothier, J. F., Roman, S., Storelli, N., Wittwer, M. & Tonolla, M., 13. feb. 2019, I : Scientific Reports. 9, 1, s. 1-14 1936.

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Chromatium
Lakes
RNA
Research
Proteins
46 Downloads (Pure)

Dynamic rating of three-core XLPE submarine cables for offshore wind farms

Nielsen, T. V. M., Jakobsen, S. & Savaghebi, M., 25. feb. 2019, I : Applied Sciences (Switzerland). 9, 4, 21 s., 800.

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submarine cables
Submarine cables
Offshore wind farms
Cable cores
ratings
36 Downloads (Pure)

Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications

Heissel, S., Frederiksen, S. J., Bunkenborg, J. & Højrup, P., 27. jun. 2019, I : PLOS ONE. 14, 6, 16 s., e0218374.

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High temperature applications
proteomics
Trypsin
trypsin
Purification
43 Downloads (Pure)

Excision of uracil from DNA by hSMUG1 includes strand incision and processing

Alexeeva, M., Moen, M. N., Grøsvik, K., Tesfahun, A. N., Xu, X. M., Muruzábal-Lecumberri, I., Olsen, K. M., Rasmussen, A., Ruoff, P., Kirpekar, F., Klungland, A. & Bjelland, S., 2019, I : Nucleic Acids Research. 47, 2, s. 779-793

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Uracil
DNA
Uracil-DNA Glycosidase
Enzymes
Deamination
88 Downloads (Pure)

First-trimester proteomic profiling identifies novel predictors of gestational diabetes mellitus

Ravnsborg, T., Svaneklink, S., Andersen, L. L. T., Larsen, M. R., Jensen, D. M. & Overgaard, M., 27. mar. 2019, I : PLOS ONE. 14, 3, 13 s., e0214457.

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gestational diabetes
Gestational Diabetes
First Pregnancy Trimester
Medical problems
proteomics

Five-Minute Proteome: An MS/MS-Free Approach to Protein Identification and Quantification

Ivanov, V., Bubis, J. A., Gorshkov, V., Tarasova, I. A., Solovyeva, E. M., Levitsky, L. I., Lobas, A. A., Pridatchenko, M. L., Kjeldsen, F. & Gorshkov, M. V., 2019.

Publikation: Konferencebidrag uden forlag/tidsskriftPosterForskningpeer review

FlashPack: Fast and simple preparation of ultra-high performance capillary columns for LC-MS

Kovalchuk, S. I., Jensen, O. N. & Rogowska-Wrzesinska, A., 1. feb. 2019, I : Molecular and Cellular Proteomics. 18, 2, s. 383-390

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Liquid chromatography
Liquid Chromatography
Sorbents
Biomolecules
Complex Mixtures

Genetic polymorphisms in genes of class switch recombination and multiple myeloma risk and survival: an IMMEnSE study

Campa, D., Martino, A., Macauda, A., Dudziński, M., Suska, A., Druzd-Sitek, A., Raab, M-S., Moreno, V., Huhn, S., Butrym, A., Sainz, J., Szombath, G., Rymko, M., Marques, H., Lesueur, F., Vangsted, A. J., Vogel, U., Kruszewski, M., Subocz, E., Buda, G. & 27 flere, Iskierka-Jażdżewska, E., Ríos, R., Merz, M., Schöttker, B., Mazur, G., Perrial, E., Martinez-Lopez, J., Butterbach, K., García Sanz, R., Goldschmidt, H., Brenner, H., Jamroziak, K., Reis, R. M., Kadar, K., Dumontet, C., Wątek, M., Haastrup, E. K., Helbig, G., Jurczyszyn, A., Jerez, A., Varkonyi, J., Barington, T., Grzasko, N., Zaucha, J. M., Andersen, V., Zawirska, D. & Canzian, F., jul. 2019, I : Leukemia and Lymphoma. 60, 7, s. 1803-1811

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Switch Genes
Genetic Polymorphisms
Genetic Association Studies
Plasma Cells
Research

Hepatic exposure of metformin in patients with non-alcoholic fatty liver disease

Sundelin, E. I. O., Gormsen, L. C., Heebøll, S., Vendelbo, M. H., Jakobsen, S., Munk, O. L., Feddersen, S., Brøsen, K., Hamilton-Dutoit, S. J., Pedersen, S. B., Grønbaek, H. & Jessen, N., aug. 2019, I : British Journal of Clinical Pharmacology. 85, 8, s. 1761-1770

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Liver
Cations
Type 2 Diabetes Mellitus
Insulin Resistance
Western World

High-Resolution Differential Ion Mobility Separations/Orbitrap Mass Spectrometry without Buffer Gas Limitations

Baird, M. A., Shliaha, P. V., Anderson, G. A., Moskovets, E., Laiko, V., Makarov, A. A., Jensen, O. N. & Shvartsburg, A. A., 21. maj 2019, I : Analytical Chemistry. 91, 10, s. 6918-6925

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Mass spectrometry
Buffers
Gases
Ions
Vacuum
22 Downloads (Pure)

Identification and quantification of sites of nitration and oxidation in the key matrix protein laminin and the structural consequences of these modifications

Lorentzen, L. G., Chuang, C. Y., Rogowska-Wrzesinska, A. & Davies, M. J., 1. jun. 2019, I : Redox Biology. 24, 4 s., 101226.

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Nitration
Laminin
Tyrosine
Oxidation
Proteins