Det Naturvidenskabelige Fakultet

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Publikationer 1966 2020

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Bidrag til bog/antologi
2019

Absolute Quantitation of Proteins by Acid Hydrolysis Combined with Amino Acid Detection by Mass Spectrometry

Mirgorodskaya, O. A., Körner, R., Kozmin, Y. P. & Roepstorff, P., 2019, Amino Acid Analysis: Methods and Protocols. Humana Press, Bind 2030. s. 11-16 6 s. (Methods in Molecular Biology, Bind 2030).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Hydrolysis
Amino Acids
Acids
Proteins
Peptides

Acoustical Signals – In Air and Water

Christensen-Dalsgaard, J., 2019, Encyclopedia of Animal Behavior . Choe, J. C. (red.). 2nd edition udg. Oxford: Academic Press, s. 438 - 448

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Applications of molecular modeling to flavoproteins: Insights and challenges

Sjulstok, E., Solov'yov, I. A. & Freddolino, P. L., 1. jan. 2019, Methods in Enzymology. Palfey, B. A. (red.). Academic Press, s. 277-314 (Methods in Enzymology, Bind 620).

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Flavoproteins
Molecular Dynamics Simulation
Research Personnel
Electrons
4,6-dinitro-o-cresol

Autoantibodies as diagnostic tools

Houen, G., 1. jan. 2019, Autoantibodies: Methods and Protocols. Houen, G. (red.). Humana Press, Bind 1901. s. 1-11 (Methods in Molecular Biology, Bind 1901).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Biomolecular Recognition of Methylated Histones

Porzberg, M., Pieters, B. J. G. E. & Mecinovic, J., 29. aug. 2019, The DNA, RNA, and Histone Methylomes. Springer, s. 435-451 17 s. (RNA Technologies (RNATECHN)).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Histones
Epigenomics
Proteins
Lysine

Calculation of mean excitation energies

Sauer, S. P. A., Sabin, J. R. & Oddershede, J., 1. jan. 2019, Advances in Quantum Chemistry. Academic Press, (Advances in Quantum Chemistry).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

excitation
stopping power
atoms
energy
molecules

Determination of autoantibodies by line immunoblotting

Sternbæk, L., Friis, T. & Houen, G., 1. jan. 2019, Autoantibodies: Methods and Protocols. Houen, G. (red.). Humana Press, Bind 1901. s. 255-262 (Methods in Molecular Biology, Bind 1901).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Immunoblotting
Research Personnel
Membranes

Determination of rheumatoid factors by ELISA

Trier, N. H. & Houen, G., 1. jan. 2019, Autoantibodies: Methods and Protocols. Houen, G. (red.). Humana Press, Bind 1901. s. 263-270 (Methods in Molecular Biology, Bind 1901).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Rheumatoid Factor
Immunoassay
False Positive Reactions
Serum

Er modellering vejen frem?

Auning, C. & Michelsen, C., 30. jun. 2019, Universitetsskolen: mellem forskning, uddannelse og skoleudvikling. von Oettingen, A. & Thorgård, K. (red.). Frederikshavn: Dafolo, 13 s. (Undervisning og læring).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskning

Information Processing in Chemical Systems

Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2019, The Energetics of Computing in Life and Machines. Wolpert, D. H., Kempes, C., Stadler, P. F. & Grochow, J. A. (red.). SFI Press

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

LC-MS Analyses of Lipid Species in Skeletal Muscle Cells and Tissue

Moreno-Torres, M., Havelund, J. F. & Faergeman, N. J., 2019, Myogenesis: Methods and protocols. Rønning, S. B. (red.). New York: Humana Press, s. 213-228 (Methods in Molecular Biology; Nr. 1889).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Liquid Chromatography
Skeletal Muscle
Lipids
Muscles
Palmitates

Nonspecific binding in immunoassays for autoantibodies

Houen, G., 1. jan. 2019, Autoantibodies: Methods and Protocols. Houen, G. (red.). Humana Press, Bind 1901. s. 13-17 (Methods in Molecular Biology, Bind 1901).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Immunoassay
Guidelines
Serum

Recent Advancements in Computing Reliable Binding Free Energies in Drug Discovery Projects

Murugan, N. A., Poongavanam, V. & Priyakumar, U. D., 1. jan. 2019, Challenges and Advances in Computational Chemistry and Physics. Springer Nature, s. 221-246 26 s. (Challenges and Advances in Computational Chemistry and Physics, Bind 27).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Free energy
Electronic structure
Pharmaceutical Preparations
Learning systems
Pharmacodynamics

Recent Advances in Anticancer Copper Compounds

Kellett, A., Molphy, Z., McKee, V. & Slator, C., 1. jan. 2019, Metal-based Anticancer Agents. Vessieres, A., Meier-Menches, S. M. & Casini, A. (red.). Royal Society of Chemistry, s. 91-119 (RSC Metallobiology; Nr. 14, Bind 2019-January).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Copper compounds
Copper
Reactive Nitrogen Species
Cell death
Reactive Oxygen Species

Self-assembly and primitive membrane formation: between stability and dynamism

Hanczyc, M. M. & Monnard, P-A., jan. 2019, Self-Assembly: From Surfactants to Nanoparticles. Nagarajan, R. (red.). Wiley, s. 101-136 (Wiley Series on Surface and Interfacial Chemistry).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Single-cell tagged reverse transcription (STRT-Seq)

Natarajan, K. N., 27. apr. 2019, Single Cell Methods: Sequencing and Proteomics. Proserpio, V. (red.). Humana Press, s. 133-153 (Methods in Molecular Biology, Bind 1979).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

RNA Sequence Analysis
Transcriptome
Complementary DNA
2018

Acoustic conditions affecting sound communication in air and underwater

Bidragets oversatte titel: Akustiske forhold der påvirker lydkommunikation i luft og under vandetLarsen, O. N. & Radford, C., 23. aug. 2018, Effects of Anthropogenic Noise on Animals. Slabbekoorn, H., Dooling, R. J., Popper, A. N. & Fay, R. R. (red.). New York, Heidelberg, Dordrecht, London: Springer, Bind 66. s. 109-144 (Springer Handbook of Auditory Research, Bind 66).

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communication
receivers
acoustics
air
sound propagation

Affinity proteomics for interactome and phosphoproteome screening in synaptosomes

Engholm-Keller, K., Bache, N., Rao, S. R., Wark, J. R., Larsen, M. R., Robinson, P. J. & Graham, M. E., sep. 2018, Synaptosomes. M. Murphy, K. (red.). Humana Press, Bind 141. s. 165-191 (Neuromethods, Bind 141).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Proteins
Isotope Labeling
Peptides
Computational Biology
Proteolysis

Ballast Water and Invasive Species in the Arctic

Holbech, H. & Pedersen, K. L., 1. apr. 2018, Arctic Marine Resource Governance and Development. Vestergaard, N., A. Kaiser, B., Fernandez, L. & Larsen, J. N. (red.). Springer, s. 115-137 (Springer Polar Sciences).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiFormidling

ballast water
invasive species
marine ecosystem
shipping
arctic environment

Basic terminology, notation and results

Bang-Jensen, J. & Gutin, G., 2018, Classes of Directed Graphs. Bang-Jensen, J. & Gutin, G. (red.). Springer, 34 s. (Springer Monographs in Mathematics).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Digraph
Notation
Figure
Standards

Biogeochemistry of sulfur isotopes

Canfield, D. E., 26. feb. 2018, Stable Isotope Geochemistry. Valley, J. W. & Cole, D. R. (red.). Mouton de Gruyter, Bind 43. s. 607-636 (Reviews in Mineralogy and Geochemistry, Bind 43).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Branching in digraphs with many and few leaves: Structural and algorithmic results

Bang-Jensen, J. & Gutin, G., sep. 2018, Optimization Problems in Graph Theory: In Honor of Gregory Z. Gutin's 60th Birthday. Goldengorin, B. (red.). Springer, s. 93-106 (Springer Optimization and Its Applications, Bind 139).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Digraph
Branching
Leaves
Zero
Vertex of a graph

Bulk nonlinear elastic strain waves in a bar with nanosize inclusions

Gula, I. A. & Samsonov (†), A. M., 2018, Generalized Models and Non-classical Approaches in Complex Materials 1. Altenbach, H., Pouget, J., Rousseau, M., Collet, B. & Michelitsch, T. (red.). Springer, s. 395-416 (Advanced Structured Materials, Bind 89).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

inclusions
constitutive equations
traveling waves
mathematical models
derivation

Chromatin Immunoprecipitation for Identification of Protein-DNA Interactions in Human Cells

Larsen, B. D., Madsen, M. R., Nielsen, R. & Mandrup, S., 2018, Two-Hybrid Systems: Methods and Protocols. Oñate-Sánchez, L. (red.). Humana Press, s. 335-352 (Methods in Molecular Biology, Bind 1794).

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Chromatin Immunoprecipitation
DNA
Proteins
Guidelines

DiMmer: Discovery of Differentially Methylated Regions in Epigenome-Wide Association Study (EWAS) Data

Frisch, T., Møller Gøttcke, J., Röttger, R., Tan, Q. & Baumbach, J., 2018, Data Mining for Systems Biology: Methods and Protocols. Mamitsuka, H. (red.). Humana Press, s. 51-62 (Methods in Molecular Biology, Bind 1807).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Programming Languages
DNA Methylation
Random Allocation

Engineering 3D Multi-Branched Nanostructures for Ultra- Sensing Applications

Chirumamilla, A., Chirumamilla, M., Roberts, A. S., Cerea, A., Skovsen, E., De Angelis, F., Proietti Zaccaria, R., Kristensen, P. K., Krahne, R., Sutherland, D., Bozhevolnyi, S. I., Pedersen, K. & Toma, A., 21. feb. 2018, Raman Spectroscopy. do Nascimento, G. M. (red.). InTechOpen

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Åben adgang

Fungi in Deep Subsurface Environments

Ivarsson, M., Bengtson, S., Drake, H. & Francis, W., 2018, Advances in Applied Microbiology. Sariaslani, S. & Gadd, G. M. (red.). Academic Press, Bind 102. s. 83-116 (Advances in Applied Microbiology, Bind 102).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Minerals
Ecosystem

Locally semicomplete digraphs and generalizations

Bang-Jensen, J., 2018, Classes of Directed Graphs. Bang-Jensen, J. & Gutin, G. (red.). Springer, s. 245-296 (Springer Monographs in Mathematics).

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Digraph
Locally Connected
Generalization
Independence number
Hamiltonian circuit

Mind the Text: Traces of Mental States in Unstructured Historical Data

Nielbo, K. L., 25. okt. 2018, Evolution, Cognition, and the History of Religion: A New Synthesis. Klostergaard Petersen, A., Ingvild Sælid, G., Martin, L. H., Sinding Jensen, J. & Sørensen, J. (red.). Leiden: Brill, s. 239–251 (Supplements to Method & Theory in the Study of Religion, Bind 13).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskningpeer review

Mutational Analysis of sRNA-mRNA Base Pairing by Electrophoretic Mobility Shift Assay

Lillebæk, E. M. S. & Kallipolitis, B. H., 2018, Bacterial Regulatory RNA: Methods and Protocols. Arluison, V. & Valverde, C. (red.). Humana Press, s. 165-176 (Methods in Molecular Biology, Bind 1737).

Publikation: Bidrag til bog/antologi/rapport/konference-proceedingBidrag til bog/antologiForskning

Electrophoretic Mobility Shift Assay
Base Pairing
RNA
Messenger RNA
Mutation

Online interactive microbial classification and geospatial distributional analysis using BioAtlas

Lund, J., Tan, Q. & Baumbach, J., 2018, Data Mining for Systems Biology: Methods and Protocols. Mamitsuka, H. (red.). New York: Humana Press, Bind 1807. s. 21-35 (Methods in Molecular Biology, Bind 1807).

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Databases
rRNA Genes
16S Ribosomal RNA
Metagenomics
Datasets

On the provenance of the pottery from Bjerre

Rasmussen, K. L. & Bech, J-H., 2018, Bronze Age Settlement and Land-Use in Thy, Northwest Denmark. Bech, J-H., Eriksen, B. V. & Kristiansen, K. (red.). Jutland Archaeological Society, Bind 2. s. 255-264 (Jysk Arkæologisk Selskabs Skrifter; Nr. 102).

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Phosphoproteomics in Microbiology: Protocols for Studying Streptomyces coelicolor Differentiation

Manteca, A., Rioseras, B., Rogowska-Wrzesinska, A. & Jensen, O. N., 2018, Microbial Proteomics: Methods and Protocols. Becher, D. (red.). Humana Press, Bind 1841. s. 249-260 (Methods in Molecular Biology).

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Streptomyces coelicolor
Microbiology
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Relative worst-order analysis: A survey

Boyar, J., Favrholdt, L. M. & Larsen, K. S., 2018, Adventures Between Lower Bounds and Higher Altitudes: Essays Dedicated to Juraj Hromkovič on the Occasion of His 60th Birthday. Böckenhauer, H-J., Komm, D. & Unger, W. (red.). 1. udg. Springer VS, s. 216-230 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 11011 LNCS).

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Åben adgang
Fil

Tournaments and Semicomplete Digraphs

Bang-Jensen, J. & Havet, F., 2018, Classes of Directed Graphs. Bang-Jensen, J. & Gutin, G. (red.). Springer, s. 35-124 (Springer Monographs in Mathematics).

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Tournament
Digraph
Range of data
Open Problems
Cover
2017

An agent-based model of sex ratio at birth distortions

Kashyap, R. & Villavicencio, F., 2017, Agent-based modelling in population studies: Concepts, methods and applications. Grow, A. & Van Bavel, J. (red.). Cham: Springer, s. 343–367 (Springer Series on Demographic Methods and Population Analysis, Bind 41).

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Analysis of Translocation-Competent Secretory Proteins by HDX-MS

Tsirigotaki, A., Papanastasiou, M., Trelle, M. B., Jørgensen, T. J. D. & Economou, A., 2017, Methods in Enzymology. Academic Press, s. 57-83 (Methods in Enzymology, Bind 586).

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Proteins
Intrinsically Disordered Proteins
Membranes
Deuterium
X Ray Crystallography

Biogeochemical cycles: Global approaches and perspectives

Kristensen, E., Connolly, R. M., Otero, X. L., Marchand, C., Ferreira, T. O. & Rivera-Monroy, V. H., 2017, Mangrove Ecosystems: A Global Biogeographic Perspective. Structure, Function and Ecosystem Services. Rivera-Monroy, V. H., Lee, S. Y., Kristensen, E. & Twilley, R. R. (red.). Cham: Springer, s. 163-209

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Characterization of the phosphoproteome and sialoproteome in brain tissues by mass spectrometry

Ibáñez-Vea, M., Kempf, S. J. & Larsen, M. R., 2017, Current Proteomic Approaches Applied to Brain Function. Santamaría, E. & Fernández-Irigoyen, J. (red.). Humana Press, s. 191-206 (Neuromethods, Bind 127).

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Mass spectrometry
Brain
Tissue
Proteins
Glycopeptides

Cheminova-sagen - som jeg oplevede det dengang

Riisgård, H. U., 28. apr. 2017, Fisk kan ikke tale: En fiskers kamp mod Cheminovas forurening. Østergaard, J. & Madsen, F. H. (red.). Rebild, s. 367-382

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Computational and statistical methods for high-throughput mass spectrometry-based PTM analysis

Schwämmle, V. & Vaudel, M., 2017, Protein Bioinformatics. H. Wu, C., N. Arighi, C. & E. Ross, K. (red.). Humana Press, s. 437-458 (Methods in Molecular Biology, Bind 1558).

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Peptides
Workflow
Multivariate Analysis
Datasets

Continuum Contributions to Dipole Oscillator-Strength Sum Rules for Hydrogen in Finite Basis Sets

Oddershede, J., Ogilvie, J. F., Sauer, S. P. A. & Sabin, J. R., 2017, Advances in Quantum Chemistry: Ratner Volume. Sabin, J. R. & Brändas, E. J. (red.). 1. udg. Elsevier Masson, s. 229-241 (Advances in Quantum Chemistry, Bind 75).

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Demographic senescence in herbaceous plants

Dahlgren, J. & Roach, D. A., 2017, The Evolution of Senescence in the Tree of Life. Shefferson, R. P., Jones, O. R. & Salguero-Gómez, R. (red.). Cambridge University Press

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Detection of Helicobacter pylori in the Gastric Mucosa by Fluorescence In Vivo Hybridization

Fontenete, S., Leite, M., Figueiredo, C., Cos, P. & Azevedo, N. F., 2017, Diagnostic Bacteriology: Methods and Protocols. Bishop-Lilly, K. A. (red.). Springer, s. 137-146 (Methods in Molecular Biology, Bind 1616).

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Microbiota
Human Body
Helicobacter pylori
Fluorescence

Effective Fragment Molecular Orbital Method

Steinmann, C. & Jensen, J. H., 2017, Fragmentation: Toward Accurate Calculations on Complex Molecular Systems. Gordon, M. S. (red.). Wiley, s. 165-181

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molecular orbitals
fragments
energy
molecular interactions
multipoles

Filter-feeding zoobenthos and hydrodynamics

Riisgård, H. U. & Larsen, P. S., 2017, Marine animal forests. The ecology of benthic biodiversity hotspots. Rossi, S., Bramanti, L., Gori, A. & Orejas, C. (red.). 1. udg. Switcherland: Springer, Bind 2. s. 787-811

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Glutamate Transporters in the Blood-Brain Barrier

Helms, H. C. C., Nielsen, C. U., Waagepetersen, H. S. & Brodin, B., 23. jul. 2017, Glial Amino Acid Transporters. Ortega, A. & Schousboe, A. (red.). 1 udg. Springer, s. 297-314 (Advances in Neurobiology; Nr. 1, Bind 16).

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Fil
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Interest and Emotions in Science Education

Petersen, M. R. & Dohn, N. B., 2017, Exploring Emotions, Aesthetics and Wellbeing in Science Education Research. Bellocchi, A., Quigley, C. & Otrel-Cass, K. (red.). Springer International Publishing Switzerland: Springer, s. 187-202 (Cultural Studies of Science Education , Bind 13).

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emotion
science
education
learning
mood

Introduction: Wilting Leaves and Rotting Branches: Reconciling Evolutionary Perspectives on Senescence

Shefferson, R., Jones, O. & Salguero-Gómez, R., 2017, The Evolution of Senescence in the Tree of Life. Shefferson, R., Jones, O. & Salguero-Gomez, R. (red.). Cambridge, UK: Cambridge University Press, s. 1-20

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maturity
evolutionary theory
fertility
mortality

Lake Cadagno: Microbial life in crenogenic meromixis

Tonolla, M., Storelli, N., Danza, F., Ravasi, D., Peduzzi, S., Posth, N. R., Cox, R. P., Jørgensen, M. F., Gregersen, L. H., Daugbjerg, N. & Frigaard, N-U., 2017, Ecology of meromictic lakes. Gulati, R., Zadereev, E. & Degermendzhy, A. (red.). Springer, s. 155-186 (Ecological Studies, Bind 228).

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